miRNA display CGI


Results 41 - 60 of 198 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5511 3' -53.9 NC_001798.1 + 75242 0.71 0.806881
Target:  5'- uCGAGGuccaccccaAUGuGGCCGCC-ACGGCggUCCg -3'
miRNA:   3'- -GCUUC---------UGCuCCGGCGGuUGCUGa-AGG- -5'
5511 3' -53.9 NC_001798.1 + 22987 0.71 0.806881
Target:  5'- cCGucGACGAGccuGCCGCgGACGGCgucgUCUc -3'
miRNA:   3'- -GCuuCUGCUC---CGGCGgUUGCUGa---AGG- -5'
5511 3' -53.9 NC_001798.1 + 151220 0.71 0.806881
Target:  5'- gGGAGcGCGGGGCCGUCcGCGGgUUgCCc -3'
miRNA:   3'- gCUUC-UGCUCCGGCGGuUGCUgAA-GG- -5'
5511 3' -53.9 NC_001798.1 + 81107 0.71 0.806881
Target:  5'- ---cGGCGAGcGCCGCCGACGcggacccCUUCUu -3'
miRNA:   3'- gcuuCUGCUC-CGGCGGUUGCu------GAAGG- -5'
5511 3' -53.9 NC_001798.1 + 81051 0.71 0.815634
Target:  5'- gGGcaGCGAGGCCaCCGAgGAgCUUCCg -3'
miRNA:   3'- gCUucUGCUCCGGcGGUUgCU-GAAGG- -5'
5511 3' -53.9 NC_001798.1 + 26257 0.71 0.815634
Target:  5'- gCGAGGACGAGGCgcacucgcaccgCGCCuGCGcgcGCUggggCCu -3'
miRNA:   3'- -GCUUCUGCUCCG------------GCGGuUGC---UGAa---GG- -5'
5511 3' -53.9 NC_001798.1 + 40962 0.71 0.815634
Target:  5'- gGGAGAUGAGaGCggUGCCGACGAUgagaCCg -3'
miRNA:   3'- gCUUCUGCUC-CG--GCGGUUGCUGaa--GG- -5'
5511 3' -53.9 NC_001798.1 + 28894 0.71 0.815634
Target:  5'- cCGAAGgucugcGCGAGGCCGCUcuccgaagaGACGAUgggagCCc -3'
miRNA:   3'- -GCUUC------UGCUCCGGCGG---------UUGCUGaa---GG- -5'
5511 3' -53.9 NC_001798.1 + 128591 0.71 0.815634
Target:  5'- gCGcGGACGcGGgCGUCAACGACgacgCCg -3'
miRNA:   3'- -GCuUCUGCuCCgGCGGUUGCUGaa--GG- -5'
5511 3' -53.9 NC_001798.1 + 135906 0.71 0.82337
Target:  5'- --cAGGCGAGGCCGacgacccccugccCCaAACGGcCUUCCg -3'
miRNA:   3'- gcuUCUGCUCCGGC-------------GG-UUGCU-GAAGG- -5'
5511 3' -53.9 NC_001798.1 + 135051 0.71 0.824221
Target:  5'- uCGGAGGCGGccGGCCGCCuccugccCGcCUUUCg -3'
miRNA:   3'- -GCUUCUGCU--CCGGCGGuu-----GCuGAAGG- -5'
5511 3' -53.9 NC_001798.1 + 1396 0.71 0.824221
Target:  5'- aCGuAGACG-GGCCGC-AGCGGCgcgCCc -3'
miRNA:   3'- -GCuUCUGCuCCGGCGgUUGCUGaa-GG- -5'
5511 3' -53.9 NC_001798.1 + 108701 0.7 0.832632
Target:  5'- gCGggGAcacCGAGGCauCCGACGACgaaCCu -3'
miRNA:   3'- -GCuuCU---GCUCCGgcGGUUGCUGaa-GG- -5'
5511 3' -53.9 NC_001798.1 + 135493 0.7 0.832632
Target:  5'- cCGggGACGcGGaCGCCGcgcACGGCgcgaUCCa -3'
miRNA:   3'- -GCuuCUGCuCCgGCGGU---UGCUGa---AGG- -5'
5511 3' -53.9 NC_001798.1 + 8791 0.7 0.832632
Target:  5'- cCGGgacGGGCGAGGCCGCgggguaaAGCGGCa-CCg -3'
miRNA:   3'- -GCU---UCUGCUCCGGCGg------UUGCUGaaGG- -5'
5511 3' -53.9 NC_001798.1 + 82842 0.7 0.835946
Target:  5'- cCGccGACGAaccacccggcccauuGGCCGCCGACcACcUCCa -3'
miRNA:   3'- -GCuuCUGCU---------------CCGGCGGUUGcUGaAGG- -5'
5511 3' -53.9 NC_001798.1 + 6634 0.7 0.840862
Target:  5'- gGggGACGGGGCC-CCGAUcccaACaUCCg -3'
miRNA:   3'- gCuuCUGCUCCGGcGGUUGc---UGaAGG- -5'
5511 3' -53.9 NC_001798.1 + 85975 0.7 0.840862
Target:  5'- aCGggGAguuCGAGGCCGCCGccGgGGCg--- -3'
miRNA:   3'- -GCuuCU---GCUCCGGCGGU--UgCUGaagg -5'
5511 3' -53.9 NC_001798.1 + 12903 0.7 0.840862
Target:  5'- aCGggGGCuuGGGGCCGugccacCCGGCGAUUUUUa -3'
miRNA:   3'- -GCuuCUG--CUCCGGC------GGUUGCUGAAGG- -5'
5511 3' -53.9 NC_001798.1 + 44852 0.7 0.84651
Target:  5'- uGggGugGGGGaaaGCCGgcgcagagccgcgcGCGugUUCCg -3'
miRNA:   3'- gCuuCugCUCCgg-CGGU--------------UGCugAAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.