miRNA display CGI


Results 21 - 40 of 198 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5511 3' -53.9 NC_001798.1 + 82006 0.73 0.681923
Target:  5'- cCGggGGCGAccGCCGCCG-CGGCcgCCg -3'
miRNA:   3'- -GCuuCUGCUc-CGGCGGUuGCUGaaGG- -5'
5511 3' -53.9 NC_001798.1 + 150168 0.73 0.692035
Target:  5'- cCGggGGCG-GGCCGCCGcccccuccGCGGCg--- -3'
miRNA:   3'- -GCuuCUGCuCCGGCGGU--------UGCUGaagg -5'
5511 3' -53.9 NC_001798.1 + 147236 0.73 0.692035
Target:  5'- gCGggGGCcccGGGGCCccgggccgcGCCGGCGGCguUUCCg -3'
miRNA:   3'- -GCuuCUG---CUCCGG---------CGGUUGCUG--AAGG- -5'
5511 3' -53.9 NC_001798.1 + 85293 0.73 0.712102
Target:  5'- gCGggGGcCGGGGuCCGCCcGCGGCccgCCc -3'
miRNA:   3'- -GCuuCU-GCUCC-GGCGGuUGCUGaa-GG- -5'
5511 3' -53.9 NC_001798.1 + 153831 0.73 0.712102
Target:  5'- gCGgcGuGCGGGGCCuCCGGCGcCUUCCc -3'
miRNA:   3'- -GCuuC-UGCUCCGGcGGUUGCuGAAGG- -5'
5511 3' -53.9 NC_001798.1 + 3957 0.72 0.731896
Target:  5'- aGAAGGCgccgGAGGCCGCgu-CGGCgUCCa -3'
miRNA:   3'- gCUUCUG----CUCCGGCGguuGCUGaAGG- -5'
5511 3' -53.9 NC_001798.1 + 2413 0.72 0.740695
Target:  5'- cCGAGGGCGccggcguguggcuGGGCC-CCGGCGGCUggcggcgCCa -3'
miRNA:   3'- -GCUUCUGC-------------UCCGGcGGUUGCUGAa------GG- -5'
5511 3' -53.9 NC_001798.1 + 95378 0.72 0.741668
Target:  5'- gGAGGGCGGGGCggcgguCGCCAgcaGCGugUUUg -3'
miRNA:   3'- gCUUCUGCUCCG------GCGGU---UGCugAAGg -5'
5511 3' -53.9 NC_001798.1 + 73974 0.72 0.751344
Target:  5'- cCGcGGGCuccGGGCCGCCGcgcAUGugUUCCa -3'
miRNA:   3'- -GCuUCUGc--UCCGGCGGU---UGCugAAGG- -5'
5511 3' -53.9 NC_001798.1 + 22355 0.72 0.751344
Target:  5'- -cGGGGCGGGGCCGCgCAuaauGCGG-UUCCa -3'
miRNA:   3'- gcUUCUGCUCCGGCG-GU----UGCUgAAGG- -5'
5511 3' -53.9 NC_001798.1 + 77261 0.72 0.760915
Target:  5'- uCGGcccuGGGCGcGGCCGCCcGCGACccggCCu -3'
miRNA:   3'- -GCU----UCUGCuCCGGCGGuUGCUGaa--GG- -5'
5511 3' -53.9 NC_001798.1 + 116427 0.72 0.760915
Target:  5'- gCGcGGcCGAcGCCGCCGACGACcggCCg -3'
miRNA:   3'- -GCuUCuGCUcCGGCGGUUGCUGaa-GG- -5'
5511 3' -53.9 NC_001798.1 + 5587 0.72 0.769433
Target:  5'- aGggGccgGCGAGGUCGCCccguugguccgcgGGCGGCU-CCg -3'
miRNA:   3'- gCuuC---UGCUCCGGCGG-------------UUGCUGAaGG- -5'
5511 3' -53.9 NC_001798.1 + 144511 0.72 0.770373
Target:  5'- uCGGAGGCGAGuaUGCCGGCGcCgaCCu -3'
miRNA:   3'- -GCUUCUGCUCcgGCGGUUGCuGaaGG- -5'
5511 3' -53.9 NC_001798.1 + 63863 0.72 0.770373
Target:  5'- uCGAAGAggcggaGAGGCCGCCcAgGuuUUCCg -3'
miRNA:   3'- -GCUUCUg-----CUCCGGCGGuUgCugAAGG- -5'
5511 3' -53.9 NC_001798.1 + 47635 0.72 0.770373
Target:  5'- cCGGcGGACccaGAGaGuCCGCgCGACGACUUCCg -3'
miRNA:   3'- -GCU-UCUG---CUC-C-GGCG-GUUGCUGAAGG- -5'
5511 3' -53.9 NC_001798.1 + 98127 0.71 0.779707
Target:  5'- --cGGGCGcugauuGGGCCGUCAGCGAgUUUCa -3'
miRNA:   3'- gcuUCUGC------UCCGGCGGUUGCUgAAGG- -5'
5511 3' -53.9 NC_001798.1 + 134479 0.71 0.779707
Target:  5'- gCGuGGGCGcgccuGGCCGCCAuucGCGACagCCc -3'
miRNA:   3'- -GCuUCUGCu----CCGGCGGU---UGCUGaaGG- -5'
5511 3' -53.9 NC_001798.1 + 22955 0.71 0.779707
Target:  5'- uGccGACGAGGCgGCCc-CGGCgUCCg -3'
miRNA:   3'- gCuuCUGCUCCGgCGGuuGCUGaAGG- -5'
5511 3' -53.9 NC_001798.1 + 28779 0.71 0.779707
Target:  5'- gGAGGAgGAGGCgGCggCGGCGGCgcgcgggUCCu -3'
miRNA:   3'- gCUUCUgCUCCGgCG--GUUGCUGa------AGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.