miRNA display CGI


Results 21 - 40 of 198 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5511 3' -53.9 NC_001798.1 + 94984 0.66 0.966266
Target:  5'- uGcAGGCGGcGGCCGCCugggccccgcagGGCGGCgcgggCCu -3'
miRNA:   3'- gCuUCUGCU-CCGGCGG------------UUGCUGaa---GG- -5'
5511 3' -53.9 NC_001798.1 + 131011 0.66 0.966266
Target:  5'- ----uACG-GGCCGCCGccagGCGACgggCCg -3'
miRNA:   3'- gcuucUGCuCCGGCGGU----UGCUGaa-GG- -5'
5511 3' -53.9 NC_001798.1 + 77646 0.66 0.966266
Target:  5'- aCGAAcuUGAGGCCGCCGuCGcCgaCCu -3'
miRNA:   3'- -GCUUcuGCUCCGGCGGUuGCuGaaGG- -5'
5511 3' -53.9 NC_001798.1 + 91328 0.66 0.966266
Target:  5'- --cAGACGccGCCcgaGCCGcCGGCUUCCc -3'
miRNA:   3'- gcuUCUGCucCGG---CGGUuGCUGAAGG- -5'
5511 3' -53.9 NC_001798.1 + 154124 0.66 0.966266
Target:  5'- cCGgcGGCGGGGaCC-CCGGCGGCg--- -3'
miRNA:   3'- -GCuuCUGCUCC-GGcGGUUGCUGaagg -5'
5511 3' -53.9 NC_001798.1 + 58082 0.66 0.965947
Target:  5'- aCGGAGAaaaaGAGGCC-CCGcagggucGCGGCcgCCc -3'
miRNA:   3'- -GCUUCUg---CUCCGGcGGU-------UGCUGaaGG- -5'
5511 3' -53.9 NC_001798.1 + 51397 0.66 0.962979
Target:  5'- gGAGGACGAcuaccccGCCGCCGucgcgcacgAUGACggCCc -3'
miRNA:   3'- gCUUCUGCUc------CGGCGGU---------UGCUGaaGG- -5'
5511 3' -53.9 NC_001798.1 + 51930 0.66 0.962979
Target:  5'- ---cGugGGGGCCGCCGcCGug--CCg -3'
miRNA:   3'- gcuuCugCUCCGGCGGUuGCugaaGG- -5'
5511 3' -53.9 NC_001798.1 + 55008 0.66 0.962979
Target:  5'- uGccGGCGGGGCCGCCcugccgggaGACgccCCg -3'
miRNA:   3'- gCuuCUGCUCCGGCGGuug------CUGaa-GG- -5'
5511 3' -53.9 NC_001798.1 + 103462 0.66 0.962979
Target:  5'- cCGGAGGCaGGGCCGCaCGcacCGugUcugggUCCa -3'
miRNA:   3'- -GCUUCUGcUCCGGCG-GUu--GCugA-----AGG- -5'
5511 3' -53.9 NC_001798.1 + 146414 0.66 0.962979
Target:  5'- gGggGACGGGGCgaGCCGggcagaguGCGGag-CCc -3'
miRNA:   3'- gCuuCUGCUCCGg-CGGU--------UGCUgaaGG- -5'
5511 3' -53.9 NC_001798.1 + 14996 0.66 0.962638
Target:  5'- gGggGGCGAGGCguguuggggGCgAGCGGCccaagaaUUCCu -3'
miRNA:   3'- gCuuCUGCUCCGg--------CGgUUGCUG-------AAGG- -5'
5511 3' -53.9 NC_001798.1 + 150587 0.66 0.962638
Target:  5'- gCGGAGACggcggggGAGaGUCGCUGAUGACUauggggggcUCCu -3'
miRNA:   3'- -GCUUCUG-------CUC-CGGCGGUUGCUGA---------AGG- -5'
5511 3' -53.9 NC_001798.1 + 79509 0.66 0.959475
Target:  5'- -cGGGGCGAGGCguaucugcgCGCCGGCGGagacCCg -3'
miRNA:   3'- gcUUCUGCUCCG---------GCGGUUGCUgaa-GG- -5'
5511 3' -53.9 NC_001798.1 + 101844 0.66 0.959475
Target:  5'- gGGAGGCGuGGGUC-CCGGCGGCggCg -3'
miRNA:   3'- gCUUCUGC-UCCGGcGGUUGCUGaaGg -5'
5511 3' -53.9 NC_001798.1 + 77712 0.66 0.959475
Target:  5'- gCGAGcGCuGGGCCGCCGGCGucgaggcggcGCUggaCCg -3'
miRNA:   3'- -GCUUcUGcUCCGGCGGUUGC----------UGAa--GG- -5'
5511 3' -53.9 NC_001798.1 + 34965 0.66 0.959475
Target:  5'- cCGGAGGgGGcGGCCGCCGAgGuGCgggggCCc -3'
miRNA:   3'- -GCUUCUgCU-CCGGCGGUUgC-UGaa---GG- -5'
5511 3' -53.9 NC_001798.1 + 144578 0.66 0.959113
Target:  5'- gCGAGGACGggcggcuGGGUgGCgAGgGGCUUCg -3'
miRNA:   3'- -GCUUCUGC-------UCCGgCGgUUgCUGAAGg -5'
5511 3' -53.9 NC_001798.1 + 15947 0.67 0.95575
Target:  5'- cCGggGGCccaauGGGGCgGCagacccCGACGuCUUCCg -3'
miRNA:   3'- -GCuuCUG-----CUCCGgCG------GUUGCuGAAGG- -5'
5511 3' -53.9 NC_001798.1 + 146589 0.67 0.95575
Target:  5'- aGcAGACG-GGCCgcggcGCCAGCGGCccacgCCu -3'
miRNA:   3'- gCuUCUGCuCCGG-----CGGUUGCUGaa---GG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.