miRNA display CGI


Results 21 - 40 of 198 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5511 3' -53.9 NC_001798.1 + 6634 0.7 0.840862
Target:  5'- gGggGACGGGGCC-CCGAUcccaACaUCCg -3'
miRNA:   3'- gCuuCUGCUCCGGcGGUUGc---UGaAGG- -5'
5511 3' -53.9 NC_001798.1 + 7885 0.67 0.941834
Target:  5'- ---uGGCGGacGGCCGCCAugaauuuuaucgccGCGGCUgcgCCc -3'
miRNA:   3'- gcuuCUGCU--CCGGCGGU--------------UGCUGAa--GG- -5'
5511 3' -53.9 NC_001798.1 + 8791 0.7 0.832632
Target:  5'- cCGGgacGGGCGAGGCCGCgggguaaAGCGGCa-CCg -3'
miRNA:   3'- -GCU---UCUGCUCCGGCGg------UUGCUGaaGG- -5'
5511 3' -53.9 NC_001798.1 + 8907 0.68 0.911734
Target:  5'- gCGAAGGUGGGGuuGCCGugacucACGAUUUUUa -3'
miRNA:   3'- -GCUUCUGCUCCggCGGU------UGCUGAAGG- -5'
5511 3' -53.9 NC_001798.1 + 9884 0.66 0.974883
Target:  5'- uGAcGGugGAGGCCaGCCAcgccaaccccGgGACcggUUCCa -3'
miRNA:   3'- gCU-UCugCUCCGG-CGGU----------UgCUG---AAGG- -5'
5511 3' -53.9 NC_001798.1 + 12243 0.7 0.848106
Target:  5'- aGAccAGACugaccguGGGGCCGCgGACGACcaggCCg -3'
miRNA:   3'- gCU--UCUG-------CUCCGGCGgUUGCUGaa--GG- -5'
5511 3' -53.9 NC_001798.1 + 12903 0.7 0.840862
Target:  5'- aCGggGGCuuGGGGCCGugccacCCGGCGAUUUUUa -3'
miRNA:   3'- -GCuuCUG--CUCCGGC------GGUUGCUGAAGG- -5'
5511 3' -53.9 NC_001798.1 + 14996 0.66 0.962638
Target:  5'- gGggGGCGAGGCguguuggggGCgAGCGGCccaagaaUUCCu -3'
miRNA:   3'- gCuuCUGCUCCGg--------CGgUUGCUG-------AAGG- -5'
5511 3' -53.9 NC_001798.1 + 15102 0.75 0.609443
Target:  5'- gGAAGGCGAGGCCGgUGGCG-CUgucgucgUCCu -3'
miRNA:   3'- gCUUCUGCUCCGGCgGUUGCuGA-------AGG- -5'
5511 3' -53.9 NC_001798.1 + 15554 0.68 0.935651
Target:  5'- cCGGccccGGGCGuuGCCGCCGccgcggcggggagugGCGACgacUCCa -3'
miRNA:   3'- -GCU----UCUGCucCGGCGGU---------------UGCUGa--AGG- -5'
5511 3' -53.9 NC_001798.1 + 15947 0.67 0.95575
Target:  5'- cCGggGGCccaauGGGGCgGCagacccCGACGuCUUCCg -3'
miRNA:   3'- -GCuuCUG-----CUCCGgCG------GUUGCuGAAGG- -5'
5511 3' -53.9 NC_001798.1 + 16193 0.69 0.892801
Target:  5'- gGggGACGcacGGGCCGCCcucCGcACgcgCCg -3'
miRNA:   3'- gCuuCUGC---UCCGGCGGuu-GC-UGaa-GG- -5'
5511 3' -53.9 NC_001798.1 + 16434 0.74 0.620687
Target:  5'- uGggGACGGcGGCuCGCCGccGCGACacccUCCa -3'
miRNA:   3'- gCuuCUGCU-CCG-GCGGU--UGCUGa---AGG- -5'
5511 3' -53.9 NC_001798.1 + 20883 0.75 0.610465
Target:  5'- gGAGGACGGGG-CGUCuGCG-CUUCCg -3'
miRNA:   3'- gCUUCUGCUCCgGCGGuUGCuGAAGG- -5'
5511 3' -53.9 NC_001798.1 + 22204 0.69 0.899345
Target:  5'- aGggGAgCGAGcCCGCCcGCGACgagggUCUc -3'
miRNA:   3'- gCuuCU-GCUCcGGCGGuUGCUGa----AGG- -5'
5511 3' -53.9 NC_001798.1 + 22355 0.72 0.751344
Target:  5'- -cGGGGCGGGGCCGCgCAuaauGCGG-UUCCa -3'
miRNA:   3'- gcUUCUGCUCCGGCG-GU----UGCUgAAGG- -5'
5511 3' -53.9 NC_001798.1 + 22769 0.68 0.933667
Target:  5'- aCGAGGACGggggacgucuccGGGCCGCggcggaGACGACcggcggCCc -3'
miRNA:   3'- -GCUUCUGC------------UCCGGCGg-----UUGCUGaa----GG- -5'
5511 3' -53.9 NC_001798.1 + 22919 0.82 0.285996
Target:  5'- aCGAAGACGAGGCCGaCGACGcCgccgCCg -3'
miRNA:   3'- -GCUUCUGCUCCGGCgGUUGCuGaa--GG- -5'
5511 3' -53.9 NC_001798.1 + 22955 0.71 0.779707
Target:  5'- uGccGACGAGGCgGCCc-CGGCgUCCg -3'
miRNA:   3'- gCuuCUGCUCCGgCGGuuGCUGaAGG- -5'
5511 3' -53.9 NC_001798.1 + 22987 0.71 0.806881
Target:  5'- cCGucGACGAGccuGCCGCgGACGGCgucgUCUc -3'
miRNA:   3'- -GCuuCUGCUC---CGGCGgUUGCUGa---AGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.