miRNA display CGI


Results 21 - 40 of 198 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5511 3' -53.9 NC_001798.1 + 138503 0.66 0.974883
Target:  5'- gGAGGGCGuGGCaCGC-GACGAUcUCg -3'
miRNA:   3'- gCUUCUGCuCCG-GCGgUUGCUGaAGg -5'
5511 3' -53.9 NC_001798.1 + 138337 0.67 0.947618
Target:  5'- aCGAGacGCGAGGCgGCCGAgcCGGCcUUCg -3'
miRNA:   3'- -GCUUc-UGCUCCGgCGGUU--GCUGaAGG- -5'
5511 3' -53.9 NC_001798.1 + 136002 0.67 0.943204
Target:  5'- cCGggGGCGGGGa-GUCGGuCGGCgUCCc -3'
miRNA:   3'- -GCuuCUGCUCCggCGGUU-GCUGaAGG- -5'
5511 3' -53.9 NC_001798.1 + 135906 0.71 0.82337
Target:  5'- --cAGGCGAGGCCGacgacccccugccCCaAACGGcCUUCCg -3'
miRNA:   3'- gcuUCUGCUCCGGC-------------GG-UUGCU-GAAGG- -5'
5511 3' -53.9 NC_001798.1 + 135493 0.7 0.832632
Target:  5'- cCGggGACGcGGaCGCCGcgcACGGCgcgaUCCa -3'
miRNA:   3'- -GCuuCUGCuCCgGCGGU---UGCUGa---AGG- -5'
5511 3' -53.9 NC_001798.1 + 135051 0.71 0.824221
Target:  5'- uCGGAGGCGGccGGCCGCCuccugccCGcCUUUCg -3'
miRNA:   3'- -GCUUCUGCU--CCGGCGGuu-----GCuGAAGG- -5'
5511 3' -53.9 NC_001798.1 + 134636 0.68 0.923178
Target:  5'- uCGAGGuguGCGAGGUCGgCCuGCGGCc-CCg -3'
miRNA:   3'- -GCUUC---UGCUCCGGC-GGuUGCUGaaGG- -5'
5511 3' -53.9 NC_001798.1 + 134479 0.71 0.779707
Target:  5'- gCGuGGGCGcgccuGGCCGCCAuucGCGACagCCc -3'
miRNA:   3'- -GCuUCUGCu----CCGGCGGU---UGCUGaaGG- -5'
5511 3' -53.9 NC_001798.1 + 134162 0.67 0.938554
Target:  5'- cCGggGcCGucgcGGCCGCCcgcgccGCGACggCCc -3'
miRNA:   3'- -GCuuCuGCu---CCGGCGGu-----UGCUGaaGG- -5'
5511 3' -53.9 NC_001798.1 + 131547 0.66 0.972211
Target:  5'- cCGGAcGCGAGcGCC-CCGACGGC--CCg -3'
miRNA:   3'- -GCUUcUGCUC-CGGcGGUUGCUGaaGG- -5'
5511 3' -53.9 NC_001798.1 + 131011 0.66 0.966266
Target:  5'- ----uACG-GGCCGCCGccagGCGACgggCCg -3'
miRNA:   3'- gcuucUGCuCCGGCGGU----UGCUGaa-GG- -5'
5511 3' -53.9 NC_001798.1 + 128591 0.71 0.815634
Target:  5'- gCGcGGACGcGGgCGUCAACGACgacgCCg -3'
miRNA:   3'- -GCuUCUGCuCCgGCGGUUGCUGaa--GG- -5'
5511 3' -53.9 NC_001798.1 + 124506 0.75 0.579925
Target:  5'- gCGggGGgGGGGCUGCgGGCGugUcgUCCc -3'
miRNA:   3'- -GCuuCUgCUCCGGCGgUUGCugA--AGG- -5'
5511 3' -53.9 NC_001798.1 + 122835 0.67 0.955365
Target:  5'- uCGggGGCGGcGGCgGCggcucgucccucuCAGCGACgacaUCCc -3'
miRNA:   3'- -GCuuCUGCU-CCGgCG-------------GUUGCUGa---AGG- -5'
5511 3' -53.9 NC_001798.1 + 122134 0.68 0.917575
Target:  5'- gGggGGCccccGGGCCGCgGGCGAggacgUCCu -3'
miRNA:   3'- gCuuCUGc---UCCGGCGgUUGCUga---AGG- -5'
5511 3' -53.9 NC_001798.1 + 121867 0.68 0.923178
Target:  5'- gGGAGGCGAcacGGCCaccGCgGAgGACgugUCCa -3'
miRNA:   3'- gCUUCUGCU---CCGG---CGgUUgCUGa--AGG- -5'
5511 3' -53.9 NC_001798.1 + 121297 0.7 0.848901
Target:  5'- cCGAcGGUGGGGCgGCCG-CGaACUUCCg -3'
miRNA:   3'- -GCUuCUGCUCCGgCGGUuGC-UGAAGG- -5'
5511 3' -53.9 NC_001798.1 + 120501 0.69 0.879032
Target:  5'- cCGGAGGCGcgcguguuGGCCGUgAACGcCgggUCCa -3'
miRNA:   3'- -GCUUCUGCu-------CCGGCGgUUGCuGa--AGG- -5'
5511 3' -53.9 NC_001798.1 + 120369 0.67 0.951799
Target:  5'- --uGGGCGAGGCUgugcacgacgcaGCgGGCGAUgUCCg -3'
miRNA:   3'- gcuUCUGCUCCGG------------CGgUUGCUGaAGG- -5'
5511 3' -53.9 NC_001798.1 + 119887 0.68 0.928017
Target:  5'- gGggGAucccgguCGGGGCCGCCAgguaaauggccAUGAUgaCCg -3'
miRNA:   3'- gCuuCU-------GCUCCGGCGGU-----------UGCUGaaGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.