miRNA display CGI


Results 1 - 20 of 198 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5511 3' -53.9 NC_001798.1 + 154124 0.66 0.966266
Target:  5'- cCGgcGGCGGGGaCC-CCGGCGGCg--- -3'
miRNA:   3'- -GCuuCUGCUCC-GGcGGUUGCUGaagg -5'
5511 3' -53.9 NC_001798.1 + 153967 0.67 0.943204
Target:  5'- gCGAGGACGcGGCCGgCGcgcucuCGACcgcggUUCCc -3'
miRNA:   3'- -GCUUCUGCuCCGGCgGUu-----GCUG-----AAGG- -5'
5511 3' -53.9 NC_001798.1 + 153831 0.73 0.712102
Target:  5'- gCGgcGuGCGGGGCCuCCGGCGcCUUCCc -3'
miRNA:   3'- -GCuuC-UGCUCCGGcGGUUGCuGAAGG- -5'
5511 3' -53.9 NC_001798.1 + 153683 0.75 0.590077
Target:  5'- gCGggGACGcggGGGCCGCCGcCGGCg--- -3'
miRNA:   3'- -GCuuCUGC---UCCGGCGGUuGCUGaagg -5'
5511 3' -53.9 NC_001798.1 + 151220 0.71 0.806881
Target:  5'- gGGAGcGCGGGGCCGUCcGCGGgUUgCCc -3'
miRNA:   3'- gCUUC-UGCUCCGGCGGuUGCUgAA-GG- -5'
5511 3' -53.9 NC_001798.1 + 150587 0.66 0.962638
Target:  5'- gCGGAGACggcggggGAGaGUCGCUGAUGACUauggggggcUCCu -3'
miRNA:   3'- -GCUUCUG-------CUC-CGGCGGUUGCUGA---------AGG- -5'
5511 3' -53.9 NC_001798.1 + 150471 0.7 0.856745
Target:  5'- gCGggGGCGcgcGGCgCGCCccGACGACUguggcagaccUCCc -3'
miRNA:   3'- -GCuuCUGCu--CCG-GCGG--UUGCUGA----------AGG- -5'
5511 3' -53.9 NC_001798.1 + 150168 0.73 0.692035
Target:  5'- cCGggGGCG-GGCCGCCGcccccuccGCGGCg--- -3'
miRNA:   3'- -GCuuCUGCuCCGGCGGU--------UGCUGaagg -5'
5511 3' -53.9 NC_001798.1 + 150126 0.78 0.435295
Target:  5'- gGAGGACGAGGCCGCgGGgccCGAg-UCCg -3'
miRNA:   3'- gCUUCUGCUCCGGCGgUU---GCUgaAGG- -5'
5511 3' -53.9 NC_001798.1 + 149931 0.67 0.938554
Target:  5'- gGAGGAgGAGGCgGC-GGCGACcgcggCCu -3'
miRNA:   3'- gCUUCUgCUCCGgCGgUUGCUGaa---GG- -5'
5511 3' -53.9 NC_001798.1 + 149681 0.68 0.911137
Target:  5'- cCGGGcuCGGGGCCGCCcucgcguGGCGcguCUUCCu -3'
miRNA:   3'- -GCUUcuGCUCCGGCGG-------UUGCu--GAAGG- -5'
5511 3' -53.9 NC_001798.1 + 149246 0.68 0.928542
Target:  5'- gCGggGGCGucGCCGgCCGGCGcggGCgcgCCc -3'
miRNA:   3'- -GCuuCUGCucCGGC-GGUUGC---UGaa-GG- -5'
5511 3' -53.9 NC_001798.1 + 148088 0.69 0.899345
Target:  5'- cCGggGGcCGGGGCCGCUAGgGAa---- -3'
miRNA:   3'- -GCuuCU-GCUCCGGCGGUUgCUgaagg -5'
5511 3' -53.9 NC_001798.1 + 147505 0.66 0.969341
Target:  5'- gGggGGgGGGGgCGCCuGCGugUgUCUc -3'
miRNA:   3'- gCuuCUgCUCCgGCGGuUGCugA-AGG- -5'
5511 3' -53.9 NC_001798.1 + 147236 0.73 0.692035
Target:  5'- gCGggGGCcccGGGGCCccgggccgcGCCGGCGGCguUUCCg -3'
miRNA:   3'- -GCuuCUG---CUCCGG---------CGGUUGCUG--AAGG- -5'
5511 3' -53.9 NC_001798.1 + 146589 0.67 0.95575
Target:  5'- aGcAGACG-GGCCgcggcGCCAGCGGCccacgCCu -3'
miRNA:   3'- gCuUCUGCuCCGG-----CGGUUGCUGaa---GG- -5'
5511 3' -53.9 NC_001798.1 + 146414 0.66 0.962979
Target:  5'- gGggGACGGGGCgaGCCGggcagaguGCGGag-CCc -3'
miRNA:   3'- gCuuCUGCUCCGg-CGGU--------UGCUgaaGG- -5'
5511 3' -53.9 NC_001798.1 + 144578 0.66 0.959113
Target:  5'- gCGAGGACGggcggcuGGGUgGCgAGgGGCUUCg -3'
miRNA:   3'- -GCUUCUGC-------UCCGgCGgUUgCUGAAGg -5'
5511 3' -53.9 NC_001798.1 + 144511 0.72 0.770373
Target:  5'- uCGGAGGCGAGuaUGCCGGCGcCgaCCu -3'
miRNA:   3'- -GCUUCUGCUCcgGCGGUUGCuGaaGG- -5'
5511 3' -53.9 NC_001798.1 + 141208 0.74 0.630918
Target:  5'- cCGcGGGACgGGGGCC-CgGACGACUUCCc -3'
miRNA:   3'- -GC-UUCUG-CUCCGGcGgUUGCUGAAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.