Results 41 - 60 of 70 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5512 | 3' | -58.4 | NC_001798.1 | + | 41463 | 0.66 | 0.824602 |
Target: 5'- -cGCCGGGgggggcggucgGCGGGC-CCAGAa---- -3' miRNA: 3'- gaCGGCCCa----------UGCCCGaGGUCUgcuuc -5' |
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5512 | 3' | -58.4 | NC_001798.1 | + | 146296 | 0.66 | 0.832838 |
Target: 5'- -aGCgGGGagUGGGCggCCGGGCGGGa -3' miRNA: 3'- gaCGgCCCauGCCCGa-GGUCUGCUUc -5' |
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5512 | 3' | -58.4 | NC_001798.1 | + | 152219 | 0.66 | 0.832838 |
Target: 5'- gUGCCGGGggucugccgcgGCGGccGCUCgGGGcCGggGu -3' miRNA: 3'- gACGGCCCa----------UGCC--CGAGgUCU-GCuuC- -5' |
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5512 | 3' | -58.4 | NC_001798.1 | + | 31044 | 0.66 | 0.840899 |
Target: 5'- -gGUCGGG--CGGGggUCGGGCGggGg -3' miRNA: 3'- gaCGGCCCauGCCCgaGGUCUGCuuC- -5' |
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5512 | 3' | -58.4 | NC_001798.1 | + | 31786 | 0.66 | 0.840899 |
Target: 5'- -cGCgCGGGU-CGGGagggCCGGGCGcGGa -3' miRNA: 3'- gaCG-GCCCAuGCCCga--GGUCUGCuUC- -5' |
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5512 | 3' | -58.4 | NC_001798.1 | + | 26880 | 0.66 | 0.816198 |
Target: 5'- -nGCgGGGgucggGCGGGCgggggUCGGGCGGGc -3' miRNA: 3'- gaCGgCCCa----UGCCCGa----GGUCUGCUUc -5' |
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5512 | 3' | -58.4 | NC_001798.1 | + | 26850 | 0.66 | 0.816198 |
Target: 5'- -nGCgGGGgucggGCGGGCgggggUCGGGCGGGc -3' miRNA: 3'- gaCGgCCCa----UGCCCGa----GGUCUGCUUc -5' |
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5512 | 3' | -58.4 | NC_001798.1 | + | 16067 | 0.67 | 0.743867 |
Target: 5'- -cGCUGGGggcgGCGGGCgUCuGugGggGc -3' miRNA: 3'- gaCGGCCCa---UGCCCGaGGuCugCuuC- -5' |
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5512 | 3' | -58.4 | NC_001798.1 | + | 152273 | 0.67 | 0.743867 |
Target: 5'- gUGCCGGGccgGGGUUCCAuGAgcCGggGu -3' miRNA: 3'- gACGGCCCaugCCCGAGGU-CU--GCuuC- -5' |
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5512 | 3' | -58.4 | NC_001798.1 | + | 104055 | 0.67 | 0.771011 |
Target: 5'- uUGUgCGGGUGCGGuugaugaGCUCCAGcGCGGu- -3' miRNA: 3'- gACG-GCCCAUGCC-------CGAGGUC-UGCUuc -5' |
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5512 | 3' | -58.4 | NC_001798.1 | + | 6404 | 0.67 | 0.781057 |
Target: 5'- -gGCCGGGgggACGGGg---GGACGggGg -3' miRNA: 3'- gaCGGCCCa--UGCCCgaggUCUGCuuC- -5' |
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5512 | 3' | -58.4 | NC_001798.1 | + | 10391 | 0.67 | 0.788266 |
Target: 5'- -gGUCGGGgucggcacagggGCGGGCUCCAcGACc--- -3' miRNA: 3'- gaCGGCCCa-----------UGCCCGAGGU-CUGcuuc -5' |
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5512 | 3' | -58.4 | NC_001798.1 | + | 45993 | 0.67 | 0.790055 |
Target: 5'- uUGUCGGGg--GGGaUCCAGGgGAGGg -3' miRNA: 3'- gACGGCCCaugCCCgAGGUCUgCUUC- -5' |
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5512 | 3' | -58.4 | NC_001798.1 | + | 6545 | 0.67 | 0.790055 |
Target: 5'- -gGCCGGGgggACGGGgggacgggCCggggGGACGggGg -3' miRNA: 3'- gaCGGCCCa--UGCCCga------GG----UCUGCuuC- -5' |
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5512 | 3' | -58.4 | NC_001798.1 | + | 6587 | 0.67 | 0.790055 |
Target: 5'- -gGCCGGGgggACGGGgggacgggCCggggGGACGggGg -3' miRNA: 3'- gaCGGCCCa--UGCCCga------GG----UCUGCuuC- -5' |
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5512 | 3' | -58.4 | NC_001798.1 | + | 75865 | 0.67 | 0.790055 |
Target: 5'- uUGcCCGGGgcgaagagaUGCGGG-UCgAGGCGGAGg -3' miRNA: 3'- gAC-GGCCC---------AUGCCCgAGgUCUGCUUC- -5' |
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5512 | 3' | -58.4 | NC_001798.1 | + | 51482 | 0.66 | 0.798917 |
Target: 5'- gUGUCGGGccCGGaGCUgCAGGCGGc- -3' miRNA: 3'- gACGGCCCauGCC-CGAgGUCUGCUuc -5' |
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5512 | 3' | -58.4 | NC_001798.1 | + | 116182 | 0.66 | 0.807634 |
Target: 5'- cCUGCCGGGcccggagcuggGCGGGCaggCuCAGGCcGAGc -3' miRNA: 3'- -GACGGCCCa----------UGCCCGa--G-GUCUGcUUC- -5' |
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5512 | 3' | -58.4 | NC_001798.1 | + | 13486 | 0.66 | 0.807634 |
Target: 5'- aUGCUGGGgggcuggaACGGGUccUCCAGGCucGGc -3' miRNA: 3'- gACGGCCCa-------UGCCCG--AGGUCUGcuUC- -5' |
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5512 | 3' | -58.4 | NC_001798.1 | + | 26820 | 0.66 | 0.816198 |
Target: 5'- -gGCgGGGgucggGCGGGCgggggUCGGGCGGGc -3' miRNA: 3'- gaCGgCCCa----UGCCCGa----GGUCUGCUUc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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