miRNA display CGI


Results 41 - 60 of 70 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5512 3' -58.4 NC_001798.1 + 45993 0.67 0.790055
Target:  5'- uUGUCGGGg--GGGaUCCAGGgGAGGg -3'
miRNA:   3'- gACGGCCCaugCCCgAGGUCUgCUUC- -5'
5512 3' -58.4 NC_001798.1 + 48155 0.66 0.816198
Target:  5'- -cGCCGcGGU-CGGGCgCCuGGCGGc- -3'
miRNA:   3'- gaCGGC-CCAuGCCCGaGGuCUGCUuc -5'
5512 3' -58.4 NC_001798.1 + 51482 0.66 0.798917
Target:  5'- gUGUCGGGccCGGaGCUgCAGGCGGc- -3'
miRNA:   3'- gACGGCCCauGCC-CGAgGUCUGCUuc -5'
5512 3' -58.4 NC_001798.1 + 61462 0.68 0.705176
Target:  5'- -cGCCGGGgccucCGGGCcCCGGAgGGc- -3'
miRNA:   3'- gaCGGCCCau---GCCCGaGGUCUgCUuc -5'
5512 3' -58.4 NC_001798.1 + 64502 0.69 0.685441
Target:  5'- -cGCCGGaGgggguggGCGGGgUCCAGGC-AAGg -3'
miRNA:   3'- gaCGGCC-Ca------UGCCCgAGGUCUGcUUC- -5'
5512 3' -58.4 NC_001798.1 + 73967 0.69 0.685441
Target:  5'- -cGCgCGGccGCGGGCUCCGGGCc--- -3'
miRNA:   3'- gaCG-GCCcaUGCCCGAGGUCUGcuuc -5'
5512 3' -58.4 NC_001798.1 + 75865 0.67 0.790055
Target:  5'- uUGcCCGGGgcgaagagaUGCGGG-UCgAGGCGGAGg -3'
miRNA:   3'- gAC-GGCCC---------AUGCCCgAGgUCUGCUUC- -5'
5512 3' -58.4 NC_001798.1 + 79053 0.69 0.635505
Target:  5'- gUGUCGGGgcUGCGGGC-CCAGcCGGc- -3'
miRNA:   3'- gACGGCCC--AUGCCCGaGGUCuGCUuc -5'
5512 3' -58.4 NC_001798.1 + 83784 0.68 0.705176
Target:  5'- -cGCCGGG---GGGC-CCGGACGcGGg -3'
miRNA:   3'- gaCGGCCCaugCCCGaGGUCUGCuUC- -5'
5512 3' -58.4 NC_001798.1 + 86265 0.74 0.375321
Target:  5'- -gGCCGGGggcGCGGGCgcaCCGG-CGggGa -3'
miRNA:   3'- gaCGGCCCa--UGCCCGa--GGUCuGCuuC- -5'
5512 3' -58.4 NC_001798.1 + 88053 0.68 0.695334
Target:  5'- -cGCUGGGgggGCGGGCUCguccccugGGGCGgcGg -3'
miRNA:   3'- gaCGGCCCa--UGCCCGAGg-------UCUGCuuC- -5'
5512 3' -58.4 NC_001798.1 + 102214 0.69 0.665537
Target:  5'- -cGCCGGGagucgaccggGCGcGGCUCgGGGCGGGc -3'
miRNA:   3'- gaCGGCCCa---------UGC-CCGAGgUCUGCUUc -5'
5512 3' -58.4 NC_001798.1 + 102463 0.7 0.575563
Target:  5'- --cCCGGGUACGGGUgggCgGGAgGAGGc -3'
miRNA:   3'- gacGGCCCAUGCCCGa--GgUCUgCUUC- -5'
5512 3' -58.4 NC_001798.1 + 104055 0.67 0.771011
Target:  5'- uUGUgCGGGUGCGGuugaugaGCUCCAGcGCGGu- -3'
miRNA:   3'- gACG-GCCCAUGCC-------CGAGGUC-UGCUuc -5'
5512 3' -58.4 NC_001798.1 + 106117 0.66 0.816198
Target:  5'- -cGCCGGGUcUGcGGUUCCGG-CGGc- -3'
miRNA:   3'- gaCGGCCCAuGC-CCGAGGUCuGCUuc -5'
5512 3' -58.4 NC_001798.1 + 111812 0.69 0.655541
Target:  5'- -cGCCGGucGCGGGCgUCCAGgggcuggcGCGggGc -3'
miRNA:   3'- gaCGGCCcaUGCCCG-AGGUC--------UGCuuC- -5'
5512 3' -58.4 NC_001798.1 + 116182 0.66 0.807634
Target:  5'- cCUGCCGGGcccggagcuggGCGGGCaggCuCAGGCcGAGc -3'
miRNA:   3'- -GACGGCCCa----------UGCCCGa--G-GUCUGcUUC- -5'
5512 3' -58.4 NC_001798.1 + 121693 0.66 0.816198
Target:  5'- -gGCUGGGggcCGcGGCUCCcgccgccgcGACGGAGg -3'
miRNA:   3'- gaCGGCCCau-GC-CCGAGGu--------CUGCUUC- -5'
5512 3' -58.4 NC_001798.1 + 122129 0.71 0.5266
Target:  5'- -aGCCGGGggggccccCGGGC-CgCGGGCGAGGa -3'
miRNA:   3'- gaCGGCCCau------GCCCGaG-GUCUGCUUC- -5'
5512 3' -58.4 NC_001798.1 + 132146 0.69 0.663539
Target:  5'- -cGCCGGGggccgGCGGGCggggcgccccccCCGGACGc-- -3'
miRNA:   3'- gaCGGCCCa----UGCCCGa-----------GGUCUGCuuc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.