miRNA display CGI


Results 21 - 40 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5512 3' -58.4 NC_001798.1 + 26850 0.66 0.816198
Target:  5'- -nGCgGGGgucggGCGGGCgggggUCGGGCGGGc -3'
miRNA:   3'- gaCGgCCCa----UGCCCGa----GGUCUGCUUc -5'
5512 3' -58.4 NC_001798.1 + 26880 0.66 0.816198
Target:  5'- -nGCgGGGgucggGCGGGCgggggUCGGGCGGGc -3'
miRNA:   3'- gaCGgCCCa----UGCCCGa----GGUCUGCUUc -5'
5512 3' -58.4 NC_001798.1 + 26931 0.68 0.695334
Target:  5'- -gGUCGGGcggGCGGGgUCgggCGGGCGggGg -3'
miRNA:   3'- gaCGGCCCa--UGCCCgAG---GUCUGCuuC- -5'
5512 3' -58.4 NC_001798.1 + 26969 0.66 0.816198
Target:  5'- -gGCgGGGgucggGCGGGCgggggUCGGGCGGGc -3'
miRNA:   3'- gaCGgCCCa----UGCCCGa----GGUCUGCUUc -5'
5512 3' -58.4 NC_001798.1 + 26999 0.66 0.816198
Target:  5'- -nGCgGGGgucggGCGGGCgggggUCGGGCGGGc -3'
miRNA:   3'- gaCGgCCCa----UGCCCGa----GGUCUGCUUc -5'
5512 3' -58.4 NC_001798.1 + 27571 0.7 0.625479
Target:  5'- -cGCgGGGgagcgGCcGGCUCCGGGgGAGGg -3'
miRNA:   3'- gaCGgCCCa----UGcCCGAGGUCUgCUUC- -5'
5512 3' -58.4 NC_001798.1 + 30950 0.73 0.451911
Target:  5'- -gGCgGGGgGCGGGCgggggUCGGGCGggGg -3'
miRNA:   3'- gaCGgCCCaUGCCCGa----GGUCUGCuuC- -5'
5512 3' -58.4 NC_001798.1 + 30983 0.7 0.625479
Target:  5'- -gGCgGGGgucggGCGGGggUCGGGCGggGg -3'
miRNA:   3'- gaCGgCCCa----UGCCCgaGGUCUGCuuC- -5'
5512 3' -58.4 NC_001798.1 + 31016 0.7 0.625479
Target:  5'- -gGCgGGGgucggGCGGGggUCGGGCGggGg -3'
miRNA:   3'- gaCGgCCCa----UGCCCgaGGUCUGCuuC- -5'
5512 3' -58.4 NC_001798.1 + 31044 0.66 0.840899
Target:  5'- -gGUCGGG--CGGGggUCGGGCGggGg -3'
miRNA:   3'- gaCGGCCCauGCCCgaGGUCUGCuuC- -5'
5512 3' -58.4 NC_001798.1 + 31786 0.66 0.840899
Target:  5'- -cGCgCGGGU-CGGGagggCCGGGCGcGGa -3'
miRNA:   3'- gaCG-GCCCAuGCCCga--GGUCUGCuUC- -5'
5512 3' -58.4 NC_001798.1 + 34832 0.76 0.301116
Target:  5'- -cGCCGGGggccCGGGCcggaccgCCGGGCGggGg -3'
miRNA:   3'- gaCGGCCCau--GCCCGa------GGUCUGCuuC- -5'
5512 3' -58.4 NC_001798.1 + 34979 0.73 0.408274
Target:  5'- -cGCCGaGGUGCGGGggcccCUCCGGcCGggGc -3'
miRNA:   3'- gaCGGC-CCAUGCCC-----GAGGUCuGCuuC- -5'
5512 3' -58.4 NC_001798.1 + 36414 0.7 0.625479
Target:  5'- cCUGCCGGGcg-GGGCggUgGGGCGggGu -3'
miRNA:   3'- -GACGGCCCaugCCCGa-GgUCUGCuuC- -5'
5512 3' -58.4 NC_001798.1 + 36493 0.75 0.344213
Target:  5'- -cGCCGGcGcgacGCGGGCggCCGGGCGggGg -3'
miRNA:   3'- gaCGGCC-Ca---UGCCCGa-GGUCUGCuuC- -5'
5512 3' -58.4 NC_001798.1 + 36532 0.74 0.375321
Target:  5'- -gGCCGGGcGgGGGCgcgcggcggCCGGGCGggGg -3'
miRNA:   3'- gaCGGCCCaUgCCCGa--------GGUCUGCuuC- -5'
5512 3' -58.4 NC_001798.1 + 36574 0.74 0.375321
Target:  5'- -gGCCGGGcGgGGGCgcgcggcggCCGGGCGggGg -3'
miRNA:   3'- gaCGGCCCaUgCCCGa--------GGUCUGCuuC- -5'
5512 3' -58.4 NC_001798.1 + 36616 0.74 0.375321
Target:  5'- -gGCCGGGcGgGGGCgcgcggcggCCGGGCGggGg -3'
miRNA:   3'- gaCGGCCCaUgCCCGa--------GGUCUGCuuC- -5'
5512 3' -58.4 NC_001798.1 + 41463 0.66 0.824602
Target:  5'- -cGCCGGGgggggcggucgGCGGGC-CCAGAa---- -3'
miRNA:   3'- gaCGGCCCa----------UGCCCGaGGUCUgcuuc -5'
5512 3' -58.4 NC_001798.1 + 45164 0.66 0.840899
Target:  5'- --cCCGGGacucgaGGGCUCCAccaucGACGggGc -3'
miRNA:   3'- gacGGCCCaug---CCCGAGGU-----CUGCuuC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.