Results 21 - 40 of 70 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5512 | 3' | -58.4 | NC_001798.1 | + | 86265 | 0.74 | 0.375321 |
Target: 5'- -gGCCGGGggcGCGGGCgcaCCGG-CGggGa -3' miRNA: 3'- gaCGGCCCa--UGCCCGa--GGUCuGCuuC- -5' |
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5512 | 3' | -58.4 | NC_001798.1 | + | 83784 | 0.68 | 0.705176 |
Target: 5'- -cGCCGGG---GGGC-CCGGACGcGGg -3' miRNA: 3'- gaCGGCCCaugCCCGaGGUCUGCuUC- -5' |
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5512 | 3' | -58.4 | NC_001798.1 | + | 79053 | 0.69 | 0.635505 |
Target: 5'- gUGUCGGGgcUGCGGGC-CCAGcCGGc- -3' miRNA: 3'- gACGGCCC--AUGCCCGaGGUCuGCUuc -5' |
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5512 | 3' | -58.4 | NC_001798.1 | + | 75865 | 0.67 | 0.790055 |
Target: 5'- uUGcCCGGGgcgaagagaUGCGGG-UCgAGGCGGAGg -3' miRNA: 3'- gAC-GGCCC---------AUGCCCgAGgUCUGCUUC- -5' |
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5512 | 3' | -58.4 | NC_001798.1 | + | 73967 | 0.69 | 0.685441 |
Target: 5'- -cGCgCGGccGCGGGCUCCGGGCc--- -3' miRNA: 3'- gaCG-GCCcaUGCCCGAGGUCUGcuuc -5' |
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5512 | 3' | -58.4 | NC_001798.1 | + | 64502 | 0.69 | 0.685441 |
Target: 5'- -cGCCGGaGgggguggGCGGGgUCCAGGC-AAGg -3' miRNA: 3'- gaCGGCC-Ca------UGCCCgAGGUCUGcUUC- -5' |
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5512 | 3' | -58.4 | NC_001798.1 | + | 61462 | 0.68 | 0.705176 |
Target: 5'- -cGCCGGGgccucCGGGCcCCGGAgGGc- -3' miRNA: 3'- gaCGGCCCau---GCCCGaGGUCUgCUuc -5' |
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5512 | 3' | -58.4 | NC_001798.1 | + | 51482 | 0.66 | 0.798917 |
Target: 5'- gUGUCGGGccCGGaGCUgCAGGCGGc- -3' miRNA: 3'- gACGGCCCauGCC-CGAgGUCUGCUuc -5' |
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5512 | 3' | -58.4 | NC_001798.1 | + | 48155 | 0.66 | 0.816198 |
Target: 5'- -cGCCGcGGU-CGGGCgCCuGGCGGc- -3' miRNA: 3'- gaCGGC-CCAuGCCCGaGGuCUGCUuc -5' |
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5512 | 3' | -58.4 | NC_001798.1 | + | 45993 | 0.67 | 0.790055 |
Target: 5'- uUGUCGGGg--GGGaUCCAGGgGAGGg -3' miRNA: 3'- gACGGCCCaugCCCgAGGUCUgCUUC- -5' |
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5512 | 3' | -58.4 | NC_001798.1 | + | 45164 | 0.66 | 0.840899 |
Target: 5'- --cCCGGGacucgaGGGCUCCAccaucGACGggGc -3' miRNA: 3'- gacGGCCCaug---CCCGAGGU-----CUGCuuC- -5' |
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5512 | 3' | -58.4 | NC_001798.1 | + | 41463 | 0.66 | 0.824602 |
Target: 5'- -cGCCGGGgggggcggucgGCGGGC-CCAGAa---- -3' miRNA: 3'- gaCGGCCCa----------UGCCCGaGGUCUgcuuc -5' |
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5512 | 3' | -58.4 | NC_001798.1 | + | 36616 | 0.74 | 0.375321 |
Target: 5'- -gGCCGGGcGgGGGCgcgcggcggCCGGGCGggGg -3' miRNA: 3'- gaCGGCCCaUgCCCGa--------GGUCUGCuuC- -5' |
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5512 | 3' | -58.4 | NC_001798.1 | + | 36574 | 0.74 | 0.375321 |
Target: 5'- -gGCCGGGcGgGGGCgcgcggcggCCGGGCGggGg -3' miRNA: 3'- gaCGGCCCaUgCCCGa--------GGUCUGCuuC- -5' |
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5512 | 3' | -58.4 | NC_001798.1 | + | 36532 | 0.74 | 0.375321 |
Target: 5'- -gGCCGGGcGgGGGCgcgcggcggCCGGGCGggGg -3' miRNA: 3'- gaCGGCCCaUgCCCGa--------GGUCUGCuuC- -5' |
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5512 | 3' | -58.4 | NC_001798.1 | + | 36493 | 0.75 | 0.344213 |
Target: 5'- -cGCCGGcGcgacGCGGGCggCCGGGCGggGg -3' miRNA: 3'- gaCGGCC-Ca---UGCCCGa-GGUCUGCuuC- -5' |
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5512 | 3' | -58.4 | NC_001798.1 | + | 36414 | 0.7 | 0.625479 |
Target: 5'- cCUGCCGGGcg-GGGCggUgGGGCGggGu -3' miRNA: 3'- -GACGGCCCaugCCCGa-GgUCUGCuuC- -5' |
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5512 | 3' | -58.4 | NC_001798.1 | + | 34979 | 0.73 | 0.408274 |
Target: 5'- -cGCCGaGGUGCGGGggcccCUCCGGcCGggGc -3' miRNA: 3'- gaCGGC-CCAUGCCC-----GAGGUCuGCuuC- -5' |
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5512 | 3' | -58.4 | NC_001798.1 | + | 34832 | 0.76 | 0.301116 |
Target: 5'- -cGCCGGGggccCGGGCcggaccgCCGGGCGggGg -3' miRNA: 3'- gaCGGCCCau--GCCCGa------GGUCUGCuuC- -5' |
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5512 | 3' | -58.4 | NC_001798.1 | + | 31786 | 0.66 | 0.840899 |
Target: 5'- -cGCgCGGGU-CGGGagggCCGGGCGcGGa -3' miRNA: 3'- gaCG-GCCCAuGCCCga--GGUCUGCuUC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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