miRNA display CGI


Results 21 - 40 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5512 3' -58.4 NC_001798.1 + 6359 0.7 0.605449
Target:  5'- -gGCCGGGgggACGGGCcggggggCCGGGgggcCGggGg -3'
miRNA:   3'- gaCGGCCCa--UGCCCGa------GGUCU----GCuuC- -5'
5512 3' -58.4 NC_001798.1 + 27571 0.7 0.625479
Target:  5'- -cGCgGGGgagcgGCcGGCUCCGGGgGAGGg -3'
miRNA:   3'- gaCGgCCCa----UGcCCGAGGUCUgCUUC- -5'
5512 3' -58.4 NC_001798.1 + 30983 0.7 0.625479
Target:  5'- -gGCgGGGgucggGCGGGggUCGGGCGggGg -3'
miRNA:   3'- gaCGgCCCa----UGCCCgaGGUCUGCuuC- -5'
5512 3' -58.4 NC_001798.1 + 31016 0.7 0.625479
Target:  5'- -gGCgGGGgucggGCGGGggUCGGGCGggGg -3'
miRNA:   3'- gaCGgCCCa----UGCCCgaGGUCUGCuuC- -5'
5512 3' -58.4 NC_001798.1 + 36414 0.7 0.625479
Target:  5'- cCUGCCGGGcg-GGGCggUgGGGCGggGu -3'
miRNA:   3'- -GACGGCCCaugCCCGa-GgUCUGCuuC- -5'
5512 3' -58.4 NC_001798.1 + 79053 0.69 0.635505
Target:  5'- gUGUCGGGgcUGCGGGC-CCAGcCGGc- -3'
miRNA:   3'- gACGGCCC--AUGCCCGaGGUCuGCUuc -5'
5512 3' -58.4 NC_001798.1 + 111812 0.69 0.655541
Target:  5'- -cGCCGGucGCGGGCgUCCAGgggcuggcGCGggGc -3'
miRNA:   3'- gaCGGCCcaUGCCCG-AGGUC--------UGCuuC- -5'
5512 3' -58.4 NC_001798.1 + 136601 0.69 0.655541
Target:  5'- gUGCgGGGgACGGGC-CCGGGCa--- -3'
miRNA:   3'- gACGgCCCaUGCCCGaGGUCUGcuuc -5'
5512 3' -58.4 NC_001798.1 + 139156 0.69 0.655541
Target:  5'- gCUGUCGGGUgGCGGccucGCUggaCCGGACGAc- -3'
miRNA:   3'- -GACGGCCCA-UGCC----CGA---GGUCUGCUuc -5'
5512 3' -58.4 NC_001798.1 + 132146 0.69 0.663539
Target:  5'- -cGCCGGGggccgGCGGGCggggcgccccccCCGGACGc-- -3'
miRNA:   3'- gaCGGCCCa----UGCCCGa-----------GGUCUGCuuc -5'
5512 3' -58.4 NC_001798.1 + 102214 0.69 0.665537
Target:  5'- -cGCCGGGagucgaccggGCGcGGCUCgGGGCGGGc -3'
miRNA:   3'- gaCGGCCCa---------UGC-CCGAGgUCUGCUUc -5'
5512 3' -58.4 NC_001798.1 + 5905 0.69 0.675506
Target:  5'- -cGCCccgagGCGGGC-CCGGACGggGg -3'
miRNA:   3'- gaCGGccca-UGCCCGaGGUCUGCuuC- -5'
5512 3' -58.4 NC_001798.1 + 25608 0.69 0.685441
Target:  5'- -cGCCGGGgGCGGGCcCCcccCGGAGu -3'
miRNA:   3'- gaCGGCCCaUGCCCGaGGucuGCUUC- -5'
5512 3' -58.4 NC_001798.1 + 73967 0.69 0.685441
Target:  5'- -cGCgCGGccGCGGGCUCCGGGCc--- -3'
miRNA:   3'- gaCG-GCCcaUGCCCGAGGUCUGcuuc -5'
5512 3' -58.4 NC_001798.1 + 64502 0.69 0.685441
Target:  5'- -cGCCGGaGgggguggGCGGGgUCCAGGC-AAGg -3'
miRNA:   3'- gaCGGCC-Ca------UGCCCgAGGUCUGcUUC- -5'
5512 3' -58.4 NC_001798.1 + 88053 0.68 0.695334
Target:  5'- -cGCUGGGgggGCGGGCUCguccccugGGGCGgcGg -3'
miRNA:   3'- gaCGGCCCa--UGCCCGAGg-------UCUGCuuC- -5'
5512 3' -58.4 NC_001798.1 + 26931 0.68 0.695334
Target:  5'- -gGUCGGGcggGCGGGgUCgggCGGGCGggGg -3'
miRNA:   3'- gaCGGCCCa--UGCCCgAG---GUCUGCuuC- -5'
5512 3' -58.4 NC_001798.1 + 83784 0.68 0.705176
Target:  5'- -cGCCGGG---GGGC-CCGGACGcGGg -3'
miRNA:   3'- gaCGGCCCaugCCCGaGGUCUGCuUC- -5'
5512 3' -58.4 NC_001798.1 + 61462 0.68 0.705176
Target:  5'- -cGCCGGGgccucCGGGCcCCGGAgGGc- -3'
miRNA:   3'- gaCGGCCCau---GCCCGaGGUCUgCUuc -5'
5512 3' -58.4 NC_001798.1 + 6307 0.68 0.724675
Target:  5'- -gGCCGGGgggACGGGCcggggggaCGGGcCGggGg -3'
miRNA:   3'- gaCGGCCCa--UGCCCGag------GUCU-GCuuC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.