miRNA display CGI


Results 21 - 40 of 70 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5512 3' -58.4 NC_001798.1 + 16067 0.67 0.743867
Target:  5'- -cGCUGGGggcgGCGGGCgUCuGugGggGc -3'
miRNA:   3'- gaCGGCCCa---UGCCCGaGGuCugCuuC- -5'
5512 3' -58.4 NC_001798.1 + 152273 0.67 0.743867
Target:  5'- gUGCCGGGccgGGGUUCCAuGAgcCGggGu -3'
miRNA:   3'- gACGGCCCaugCCCGAGGU-CU--GCuuC- -5'
5512 3' -58.4 NC_001798.1 + 104055 0.67 0.771011
Target:  5'- uUGUgCGGGUGCGGuugaugaGCUCCAGcGCGGu- -3'
miRNA:   3'- gACG-GCCCAUGCC-------CGAGGUC-UGCUuc -5'
5512 3' -58.4 NC_001798.1 + 6404 0.67 0.781057
Target:  5'- -gGCCGGGgggACGGGg---GGACGggGg -3'
miRNA:   3'- gaCGGCCCa--UGCCCgaggUCUGCuuC- -5'
5512 3' -58.4 NC_001798.1 + 10391 0.67 0.788266
Target:  5'- -gGUCGGGgucggcacagggGCGGGCUCCAcGACc--- -3'
miRNA:   3'- gaCGGCCCa-----------UGCCCGAGGU-CUGcuuc -5'
5512 3' -58.4 NC_001798.1 + 45993 0.67 0.790055
Target:  5'- uUGUCGGGg--GGGaUCCAGGgGAGGg -3'
miRNA:   3'- gACGGCCCaugCCCgAGGUCUgCUUC- -5'
5512 3' -58.4 NC_001798.1 + 6545 0.67 0.790055
Target:  5'- -gGCCGGGgggACGGGgggacgggCCggggGGACGggGg -3'
miRNA:   3'- gaCGGCCCa--UGCCCga------GG----UCUGCuuC- -5'
5512 3' -58.4 NC_001798.1 + 6587 0.67 0.790055
Target:  5'- -gGCCGGGgggACGGGgggacgggCCggggGGACGggGg -3'
miRNA:   3'- gaCGGCCCa--UGCCCga------GG----UCUGCuuC- -5'
5512 3' -58.4 NC_001798.1 + 75865 0.67 0.790055
Target:  5'- uUGcCCGGGgcgaagagaUGCGGG-UCgAGGCGGAGg -3'
miRNA:   3'- gAC-GGCCC---------AUGCCCgAGgUCUGCUUC- -5'
5512 3' -58.4 NC_001798.1 + 26931 0.68 0.695334
Target:  5'- -gGUCGGGcggGCGGGgUCgggCGGGCGggGg -3'
miRNA:   3'- gaCGGCCCa--UGCCCgAG---GUCUGCuuC- -5'
5512 3' -58.4 NC_001798.1 + 88053 0.68 0.695334
Target:  5'- -cGCUGGGgggGCGGGCUCguccccugGGGCGgcGg -3'
miRNA:   3'- gaCGGCCCa--UGCCCGAGg-------UCUGCuuC- -5'
5512 3' -58.4 NC_001798.1 + 83784 0.68 0.705176
Target:  5'- -cGCCGGG---GGGC-CCGGACGcGGg -3'
miRNA:   3'- gaCGGCCCaugCCCGaGGUCUGCuUC- -5'
5512 3' -58.4 NC_001798.1 + 61462 0.68 0.705176
Target:  5'- -cGCCGGGgccucCGGGCcCCGGAgGGc- -3'
miRNA:   3'- gaCGGCCCau---GCCCGaGGUCUgCUuc -5'
5512 3' -58.4 NC_001798.1 + 6268 0.68 0.724675
Target:  5'- -gGCCGGGgggACGGGCcggggggaCGGGcCGggGg -3'
miRNA:   3'- gaCGGCCCa--UGCCCGag------GUCU-GCuuC- -5'
5512 3' -58.4 NC_001798.1 + 6307 0.68 0.724675
Target:  5'- -gGCCGGGgggACGGGCcggggggaCGGGcCGggGg -3'
miRNA:   3'- gaCGGCCCa--UGCCCGag------GUCU-GCuuC- -5'
5512 3' -58.4 NC_001798.1 + 132146 0.69 0.663539
Target:  5'- -cGCCGGGggccgGCGGGCggggcgccccccCCGGACGc-- -3'
miRNA:   3'- gaCGGCCCa----UGCCCGa-----------GGUCUGCuuc -5'
5512 3' -58.4 NC_001798.1 + 64502 0.69 0.685441
Target:  5'- -cGCCGGaGgggguggGCGGGgUCCAGGC-AAGg -3'
miRNA:   3'- gaCGGCC-Ca------UGCCCgAGGUCUGcUUC- -5'
5512 3' -58.4 NC_001798.1 + 25608 0.69 0.685441
Target:  5'- -cGCCGGGgGCGGGCcCCcccCGGAGu -3'
miRNA:   3'- gaCGGCCCaUGCCCGaGGucuGCUUC- -5'
5512 3' -58.4 NC_001798.1 + 5905 0.69 0.675506
Target:  5'- -cGCCccgagGCGGGC-CCGGACGggGg -3'
miRNA:   3'- gaCGGccca-UGCCCGaGGUCUGCuuC- -5'
5512 3' -58.4 NC_001798.1 + 102214 0.69 0.665537
Target:  5'- -cGCCGGGagucgaccggGCGcGGCUCgGGGCGGGc -3'
miRNA:   3'- gaCGGCCCa---------UGC-CCGAGgUCUGCUUc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.