miRNA display CGI


Results 1 - 20 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5512 3' -58.4 NC_001798.1 + 153332 0.73 0.442977
Target:  5'- -aGCuCGGGccuCGGGCUCCAGGCa--- -3'
miRNA:   3'- gaCG-GCCCau-GCCCGAGGUCUGcuuc -5'
5512 3' -58.4 NC_001798.1 + 152273 0.67 0.743867
Target:  5'- gUGCCGGGccgGGGUUCCAuGAgcCGggGu -3'
miRNA:   3'- gACGGCCCaugCCCGAGGU-CU--GCuuC- -5'
5512 3' -58.4 NC_001798.1 + 152219 0.66 0.832838
Target:  5'- gUGCCGGGggucugccgcgGCGGccGCUCgGGGcCGggGu -3'
miRNA:   3'- gACGGCCCa----------UGCC--CGAGgUCU-GCuuC- -5'
5512 3' -58.4 NC_001798.1 + 149665 0.76 0.281179
Target:  5'- -cGCCGGGUcGCGGGCcCCGGGCucGGg -3'
miRNA:   3'- gaCGGCCCA-UGCCCGaGGUCUGcuUC- -5'
5512 3' -58.4 NC_001798.1 + 149453 0.72 0.479283
Target:  5'- -aGCaGGGUGCGgcGGCUCCAcGCGggGg -3'
miRNA:   3'- gaCGgCCCAUGC--CCGAGGUcUGCuuC- -5'
5512 3' -58.4 NC_001798.1 + 147485 0.73 0.451911
Target:  5'- -cGCCGGGggACccaGGCUCCGGGgGggGg -3'
miRNA:   3'- gaCGGCCCa-UGc--CCGAGGUCUgCuuC- -5'
5512 3' -58.4 NC_001798.1 + 146296 0.66 0.832838
Target:  5'- -aGCgGGGagUGGGCggCCGGGCGGGa -3'
miRNA:   3'- gaCGgCCCauGCCCGa-GGUCUGCUUc -5'
5512 3' -58.4 NC_001798.1 + 146085 0.66 0.824602
Target:  5'- -gGuCCGGGgcgagGCGGGC---GGGCGAAGg -3'
miRNA:   3'- gaC-GGCCCa----UGCCCGaggUCUGCUUC- -5'
5512 3' -58.4 NC_001798.1 + 139156 0.69 0.655541
Target:  5'- gCUGUCGGGUgGCGGccucGCUggaCCGGACGAc- -3'
miRNA:   3'- -GACGGCCCA-UGCC----CGA---GGUCUGCUuc -5'
5512 3' -58.4 NC_001798.1 + 136601 0.69 0.655541
Target:  5'- gUGCgGGGgACGGGC-CCGGGCa--- -3'
miRNA:   3'- gACGgCCCaUGCCCGaGGUCUGcuuc -5'
5512 3' -58.4 NC_001798.1 + 132146 0.69 0.663539
Target:  5'- -cGCCGGGggccgGCGGGCggggcgccccccCCGGACGc-- -3'
miRNA:   3'- gaCGGCCCa----UGCCCGa-----------GGUCUGCuuc -5'
5512 3' -58.4 NC_001798.1 + 122129 0.71 0.5266
Target:  5'- -aGCCGGGggggccccCGGGC-CgCGGGCGAGGa -3'
miRNA:   3'- gaCGGCCCau------GCCCGaG-GUCUGCUUC- -5'
5512 3' -58.4 NC_001798.1 + 121693 0.66 0.816198
Target:  5'- -gGCUGGGggcCGcGGCUCCcgccgccgcGACGGAGg -3'
miRNA:   3'- gaCGGCCCau-GC-CCGAGGu--------CUGCUUC- -5'
5512 3' -58.4 NC_001798.1 + 116182 0.66 0.807634
Target:  5'- cCUGCCGGGcccggagcuggGCGGGCaggCuCAGGCcGAGc -3'
miRNA:   3'- -GACGGCCCa----------UGCCCGa--G-GUCUGcUUC- -5'
5512 3' -58.4 NC_001798.1 + 111812 0.69 0.655541
Target:  5'- -cGCCGGucGCGGGCgUCCAGgggcuggcGCGggGc -3'
miRNA:   3'- gaCGGCCcaUGCCCG-AGGUC--------UGCuuC- -5'
5512 3' -58.4 NC_001798.1 + 106117 0.66 0.816198
Target:  5'- -cGCCGGGUcUGcGGUUCCGG-CGGc- -3'
miRNA:   3'- gaCGGCCCAuGC-CCGAGGUCuGCUuc -5'
5512 3' -58.4 NC_001798.1 + 104055 0.67 0.771011
Target:  5'- uUGUgCGGGUGCGGuugaugaGCUCCAGcGCGGu- -3'
miRNA:   3'- gACG-GCCCAUGCC-------CGAGGUC-UGCUuc -5'
5512 3' -58.4 NC_001798.1 + 102463 0.7 0.575563
Target:  5'- --cCCGGGUACGGGUgggCgGGAgGAGGc -3'
miRNA:   3'- gacGGCCCAUGCCCGa--GgUCUgCUUC- -5'
5512 3' -58.4 NC_001798.1 + 102214 0.69 0.665537
Target:  5'- -cGCCGGGagucgaccggGCGcGGCUCgGGGCGGGc -3'
miRNA:   3'- gaCGGCCCa---------UGC-CCGAGgUCUGCUUc -5'
5512 3' -58.4 NC_001798.1 + 88053 0.68 0.695334
Target:  5'- -cGCUGGGgggGCGGGCUCguccccugGGGCGgcGg -3'
miRNA:   3'- gaCGGCCCa--UGCCCGAGg-------UCUGCuuC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.