Results 41 - 60 of 147 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5513 | 3' | -55.6 | NC_001798.1 | + | 147985 | 0.66 | 0.929503 |
Target: 5'- -aGGCGCGUGC-CCGGccACAGC-CguGg -3' miRNA: 3'- agCUGCGCACGcGGUU--UGUCGuGguC- -5' |
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5513 | 3' | -55.6 | NC_001798.1 | + | 150430 | 0.66 | 0.929503 |
Target: 5'- gCGGCGCGggGCGgacuCCGGAC-GCGCgGGg -3' miRNA: 3'- aGCUGCGCa-CGC----GGUUUGuCGUGgUC- -5' |
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5513 | 3' | -55.6 | NC_001798.1 | + | 11453 | 0.66 | 0.929503 |
Target: 5'- cUGGcCGCGgggGCGCCuguauCGGCGCUGGc -3' miRNA: 3'- aGCU-GCGCa--CGCGGuuu--GUCGUGGUC- -5' |
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5513 | 3' | -55.6 | NC_001798.1 | + | 77732 | 0.66 | 0.929503 |
Target: 5'- gUCGAgGCG-GCGCUggaccgcgucgaGAACcGCGCCGa -3' miRNA: 3'- -AGCUgCGCaCGCGG------------UUUGuCGUGGUc -5' |
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5513 | 3' | -55.6 | NC_001798.1 | + | 85151 | 0.66 | 0.929503 |
Target: 5'- aCGAgGCccuGUGCGCCGAGCuccuGGCgGCCu- -3' miRNA: 3'- aGCUgCG---CACGCGGUUUG----UCG-UGGuc -5' |
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5513 | 3' | -55.6 | NC_001798.1 | + | 138426 | 0.66 | 0.924163 |
Target: 5'- cUCGcuguCGCucuUGCGCCccAACAGCACCu- -3' miRNA: 3'- -AGCu---GCGc--ACGCGGu-UUGUCGUGGuc -5' |
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5513 | 3' | -55.6 | NC_001798.1 | + | 115853 | 0.66 | 0.924163 |
Target: 5'- cUCGGCGUugGcCGCCAcGCcauGGCGCCGGc -3' miRNA: 3'- -AGCUGCGcaC-GCGGUuUG---UCGUGGUC- -5' |
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5513 | 3' | -55.6 | NC_001798.1 | + | 149649 | 0.66 | 0.912763 |
Target: 5'- --aGCGCGUGagGCCG---GGCGCCGGg -3' miRNA: 3'- agcUGCGCACg-CGGUuugUCGUGGUC- -5' |
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5513 | 3' | -55.6 | NC_001798.1 | + | 24041 | 0.66 | 0.912763 |
Target: 5'- cCG-CGCGUgGCGCCcggGGACguGGCGCUGGa -3' miRNA: 3'- aGCuGCGCA-CGCGG---UUUG--UCGUGGUC- -5' |
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5513 | 3' | -55.6 | NC_001798.1 | + | 24435 | 0.66 | 0.912763 |
Target: 5'- aCGAgCGCGcgGUGCCcgccggcuACGGCGCCGc -3' miRNA: 3'- aGCU-GCGCa-CGCGGuu------UGUCGUGGUc -5' |
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5513 | 3' | -55.6 | NC_001798.1 | + | 78391 | 0.66 | 0.912763 |
Target: 5'- cUGGuCGCGUGCGC--GGCGGCGuuGGa -3' miRNA: 3'- aGCU-GCGCACGCGguUUGUCGUggUC- -5' |
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5513 | 3' | -55.6 | NC_001798.1 | + | 149394 | 0.66 | 0.912763 |
Target: 5'- cCGACGCGggggGCGUCGggUAGUcgggggGCCu- -3' miRNA: 3'- aGCUGCGCa---CGCGGUuuGUCG------UGGuc -5' |
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5513 | 3' | -55.6 | NC_001798.1 | + | 2844 | 0.66 | 0.912763 |
Target: 5'- aCGGCGCGcacgGCgGCCAcGGCGGCcucgcugccGCCGGc -3' miRNA: 3'- aGCUGCGCa---CG-CGGU-UUGUCG---------UGGUC- -5' |
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5513 | 3' | -55.6 | NC_001798.1 | + | 58124 | 0.66 | 0.918012 |
Target: 5'- cCGGCGUcUGgGUCcuugugaAGGCGGCGCCGGa -3' miRNA: 3'- aGCUGCGcACgCGG-------UUUGUCGUGGUC- -5' |
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5513 | 3' | -55.6 | NC_001798.1 | + | 97464 | 0.66 | 0.918583 |
Target: 5'- cUGGCGCGgcuggGgGCCG-GCGGCgcgACCGGg -3' miRNA: 3'- aGCUGCGCa----CgCGGUuUGUCG---UGGUC- -5' |
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5513 | 3' | -55.6 | NC_001798.1 | + | 134444 | 0.66 | 0.918583 |
Target: 5'- cCGcGCGCGU-CGCCGAGCaccccGGCGCgCGGu -3' miRNA: 3'- aGC-UGCGCAcGCGGUUUG-----UCGUG-GUC- -5' |
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5513 | 3' | -55.6 | NC_001798.1 | + | 78154 | 0.66 | 0.924163 |
Target: 5'- aCGA-GCGUGC-CCGGcCuGCGCCGGu -3' miRNA: 3'- aGCUgCGCACGcGGUUuGuCGUGGUC- -5' |
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5513 | 3' | -55.6 | NC_001798.1 | + | 36306 | 0.66 | 0.924163 |
Target: 5'- gUGugGCGgcgggGCGCgGGcCGGgGCCGGg -3' miRNA: 3'- aGCugCGCa----CGCGgUUuGUCgUGGUC- -5' |
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5513 | 3' | -55.6 | NC_001798.1 | + | 65534 | 0.66 | 0.924163 |
Target: 5'- -gGugGCGgaucagGCGCUugaaGAACAGguCCGGc -3' miRNA: 3'- agCugCGCa-----CGCGG----UUUGUCguGGUC- -5' |
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5513 | 3' | -55.6 | NC_001798.1 | + | 108639 | 0.66 | 0.924163 |
Target: 5'- aCGACGgG-GCGaCCGAGaGGCAcCCGGa -3' miRNA: 3'- aGCUGCgCaCGC-GGUUUgUCGU-GGUC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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