miRNA display CGI


Results 41 - 60 of 147 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5513 3' -55.6 NC_001798.1 + 111800 0.7 0.742625
Target:  5'- aCGACaucCGUGCGCCGGucGCGgGCGuCCAGg -3'
miRNA:   3'- aGCUGc--GCACGCGGUU--UGU-CGU-GGUC- -5'
5513 3' -55.6 NC_001798.1 + 26068 0.69 0.760965
Target:  5'- cCGACGCGccgccgcUGCGCCucugccGCGGgGCCAa -3'
miRNA:   3'- aGCUGCGC-------ACGCGGuu----UGUCgUGGUc -5'
5513 3' -55.6 NC_001798.1 + 97632 0.69 0.760965
Target:  5'- gCGACGCGgGcCGCCGcgGACgugcgggAGCGCCGGc -3'
miRNA:   3'- aGCUGCGCaC-GCGGU--UUG-------UCGUGGUC- -5'
5513 3' -55.6 NC_001798.1 + 34864 0.69 0.76192
Target:  5'- -gGACGCcuuccgcccgGCGCCGGGCGGCuacCCGGg -3'
miRNA:   3'- agCUGCGca--------CGCGGUUUGUCGu--GGUC- -5'
5513 3' -55.6 NC_001798.1 + 24543 0.69 0.76192
Target:  5'- aCGACGaCG-GCGCCGgcggugguGGCGGCgGCCGGc -3'
miRNA:   3'- aGCUGC-GCaCGCGGU--------UUGUCG-UGGUC- -5'
5513 3' -55.6 NC_001798.1 + 132678 0.69 0.76192
Target:  5'- gCGACGCGUcgcaCGCCGAcGCGGCG-CAGg -3'
miRNA:   3'- aGCUGCGCAc---GCGGUU-UGUCGUgGUC- -5'
5513 3' -55.6 NC_001798.1 + 30544 0.69 0.76192
Target:  5'- gCGACGUGUGUGCCGuguGCAcGgACgAGa -3'
miRNA:   3'- aGCUGCGCACGCGGUu--UGU-CgUGgUC- -5'
5513 3' -55.6 NC_001798.1 + 77771 0.69 0.770456
Target:  5'- uUCGACGUGgucgagcUGCGCCGccuGCAgGCGCUGGc -3'
miRNA:   3'- -AGCUGCGC-------ACGCGGUu--UGU-CGUGGUC- -5'
5513 3' -55.6 NC_001798.1 + 130990 0.69 0.771398
Target:  5'- gCGugGCGUGUggcaucGCCAuACGGgccgcCGCCAGg -3'
miRNA:   3'- aGCugCGCACG------CGGUuUGUC-----GUGGUC- -5'
5513 3' -55.6 NC_001798.1 + 1543 0.69 0.771398
Target:  5'- aCGGCGCGgcgguacucGCGCgGggacAugGGCACCAGc -3'
miRNA:   3'- aGCUGCGCa--------CGCGgU----UugUCGUGGUC- -5'
5513 3' -55.6 NC_001798.1 + 132597 0.69 0.771398
Target:  5'- aCGugGUGaGCGCCAGcggGCAGUGgCCGGc -3'
miRNA:   3'- aGCugCGCaCGCGGUU---UGUCGU-GGUC- -5'
5513 3' -55.6 NC_001798.1 + 102728 0.69 0.780751
Target:  5'- aCGACGCGacuugacGCGCaCGGACGGCgACCu- -3'
miRNA:   3'- aGCUGCGCa------CGCG-GUUUGUCG-UGGuc -5'
5513 3' -55.6 NC_001798.1 + 4406 0.69 0.78997
Target:  5'- gUCGGCGgG-GCGCCGGgggucGCGGCGaCAGg -3'
miRNA:   3'- -AGCUGCgCaCGCGGUU-----UGUCGUgGUC- -5'
5513 3' -55.6 NC_001798.1 + 154077 0.69 0.798145
Target:  5'- -gGGCGCGgcacggcuggaGCGCCGGGgcgcggcCGGCGCCGGg -3'
miRNA:   3'- agCUGCGCa----------CGCGGUUU-------GUCGUGGUC- -5'
5513 3' -55.6 NC_001798.1 + 52514 0.69 0.799046
Target:  5'- aCGACGCG-GCgGCCGcGC-GCGCCGu -3'
miRNA:   3'- aGCUGCGCaCG-CGGUuUGuCGUGGUc -5'
5513 3' -55.6 NC_001798.1 + 56526 0.69 0.799046
Target:  5'- aUCGugGCG-GUGCCGG--GGCGCCc- -3'
miRNA:   3'- -AGCugCGCaCGCGGUUugUCGUGGuc -5'
5513 3' -55.6 NC_001798.1 + 39431 0.69 0.799046
Target:  5'- cCGucCGCGUGCggggggGUCAggGACAGCGCCAu -3'
miRNA:   3'- aGCu-GCGCACG------CGGU--UUGUCGUGGUc -5'
5513 3' -55.6 NC_001798.1 + 11757 0.69 0.80797
Target:  5'- -aGGCGCG-GgGCCGAaaagggaaGCuGCGCCGGa -3'
miRNA:   3'- agCUGCGCaCgCGGUU--------UGuCGUGGUC- -5'
5513 3' -55.6 NC_001798.1 + 76643 0.69 0.80797
Target:  5'- -aGACGCGcUGCGgCAGGCgAGgGCCAu -3'
miRNA:   3'- agCUGCGC-ACGCgGUUUG-UCgUGGUc -5'
5513 3' -55.6 NC_001798.1 + 93306 0.69 0.80797
Target:  5'- gCGcCGCGggccucguggGCGCCAugguguuCAGCACCAa -3'
miRNA:   3'- aGCuGCGCa---------CGCGGUuu-----GUCGUGGUc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.