miRNA display CGI


Results 21 - 40 of 147 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5513 3' -55.6 NC_001798.1 + 1591 0.72 0.600754
Target:  5'- cCGaaGCGCGUGCGCac-GCGGUACCGc -3'
miRNA:   3'- aGC--UGCGCACGCGguuUGUCGUGGUc -5'
5513 3' -55.6 NC_001798.1 + 12852 0.72 0.621257
Target:  5'- gCGugGCGUuggugGUGUCGGACAGCuCCGGc -3'
miRNA:   3'- aGCugCGCA-----CGCGGUUUGUCGuGGUC- -5'
5513 3' -55.6 NC_001798.1 + 96972 0.72 0.621257
Target:  5'- cUGGCGCGgaccGCGgCGGGCGGCgggGCCAGg -3'
miRNA:   3'- aGCUGCGCa---CGCgGUUUGUCG---UGGUC- -5'
5513 3' -55.6 NC_001798.1 + 90411 0.72 0.630498
Target:  5'- cCGGCGCGUucccGCgGCCGggcuugaGGCGGUACCAGc -3'
miRNA:   3'- aGCUGCGCA----CG-CGGU-------UUGUCGUGGUC- -5'
5513 3' -55.6 NC_001798.1 + 47062 0.71 0.652053
Target:  5'- -gGACGCGcaaUGCCGgggcGACAGCGCCGGu -3'
miRNA:   3'- agCUGCGCac-GCGGU----UUGUCGUGGUC- -5'
5513 3' -55.6 NC_001798.1 + 26341 0.71 0.652053
Target:  5'- gCGACGcCGUGCGC--GGCGGC-CCGGc -3'
miRNA:   3'- aGCUGC-GCACGCGguUUGUCGuGGUC- -5'
5513 3' -55.6 NC_001798.1 + 146449 0.71 0.652053
Target:  5'- cCGGagccCGCGgccGCaGCCGAGCAGCGCCGc -3'
miRNA:   3'- aGCU----GCGCa--CG-CGGUUUGUCGUGGUc -5'
5513 3' -55.6 NC_001798.1 + 153735 0.71 0.662297
Target:  5'- gUCGugGUGcGCaGCCG--UAGCGCCAGg -3'
miRNA:   3'- -AGCugCGCaCG-CGGUuuGUCGUGGUC- -5'
5513 3' -55.6 NC_001798.1 + 1264 0.71 0.662297
Target:  5'- gCGucCGCGU-CGUCGcGCAGCACCAGc -3'
miRNA:   3'- aGCu-GCGCAcGCGGUuUGUCGUGGUC- -5'
5513 3' -55.6 NC_001798.1 + 124086 0.71 0.662297
Target:  5'- gCGGCGCcUGCGCCccGACGGC-CCAc -3'
miRNA:   3'- aGCUGCGcACGCGGu-UUGUCGuGGUc -5'
5513 3' -55.6 NC_001798.1 + 1508 0.71 0.672517
Target:  5'- cCGAgGCGgcgGCccgGCCGucCAGCGCCGGg -3'
miRNA:   3'- aGCUgCGCa--CG---CGGUuuGUCGUGGUC- -5'
5513 3' -55.6 NC_001798.1 + 63744 0.71 0.68981
Target:  5'- -aGGCGCGgcGCGCCuggucguuguugugAAAgAGCACCAGc -3'
miRNA:   3'- agCUGCGCa-CGCGG--------------UUUgUCGUGGUC- -5'
5513 3' -55.6 NC_001798.1 + 2422 0.71 0.691836
Target:  5'- cCGGCGUGUG-GCUGggccccggcggcuGGCGGCGCCAGc -3'
miRNA:   3'- aGCUGCGCACgCGGU-------------UUGUCGUGGUC- -5'
5513 3' -55.6 NC_001798.1 + 71712 0.71 0.692849
Target:  5'- aCGGC-CGaGCGCCGcuuCAGCGCCGGc -3'
miRNA:   3'- aGCUGcGCaCGCGGUuu-GUCGUGGUC- -5'
5513 3' -55.6 NC_001798.1 + 9152 0.71 0.702943
Target:  5'- -gGGCGCG-GCGCCGccc-GCGCCGGg -3'
miRNA:   3'- agCUGCGCaCGCGGUuuguCGUGGUC- -5'
5513 3' -55.6 NC_001798.1 + 36500 0.7 0.712977
Target:  5'- gCGACGCGgGCgGCCGGgcgggggcgcGCGGCgGCCGGg -3'
miRNA:   3'- aGCUGCGCaCG-CGGUU----------UGUCG-UGGUC- -5'
5513 3' -55.6 NC_001798.1 + 31206 0.7 0.712977
Target:  5'- cCGGCGCccccugGCGCCccgcgGAGCAGCAgCAGc -3'
miRNA:   3'- aGCUGCGca----CGCGG-----UUUGUCGUgGUC- -5'
5513 3' -55.6 NC_001798.1 + 84997 0.7 0.712977
Target:  5'- -gGACGCGUGCGCCccGCucgACCGGc -3'
miRNA:   3'- agCUGCGCACGCGGuuUGucgUGGUC- -5'
5513 3' -55.6 NC_001798.1 + 153371 0.7 0.722941
Target:  5'- cUCGGC-CGc-CGCCAcGCGGCGCCGGa -3'
miRNA:   3'- -AGCUGcGCacGCGGUuUGUCGUGGUC- -5'
5513 3' -55.6 NC_001798.1 + 111800 0.7 0.742625
Target:  5'- aCGACaucCGUGCGCCGGucGCGgGCGuCCAGg -3'
miRNA:   3'- aGCUGc--GCACGCGGUU--UGU-CGU-GGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.