miRNA display CGI


Results 21 - 40 of 147 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5513 3' -55.6 NC_001798.1 + 11947 0.67 0.89388
Target:  5'- gCGGCuGCc-GCGCCAGACccAGCuCCAGg -3'
miRNA:   3'- aGCUG-CGcaCGCGGUUUG--UCGuGGUC- -5'
5513 3' -55.6 NC_001798.1 + 12852 0.72 0.621257
Target:  5'- gCGugGCGUuggugGUGUCGGACAGCuCCGGc -3'
miRNA:   3'- aGCugCGCA-----CGCGGUUUGUCGuGGUC- -5'
5513 3' -55.6 NC_001798.1 + 16330 0.74 0.491057
Target:  5'- gCGGCGCG-GUcCCAGAuCGGCACCAGc -3'
miRNA:   3'- aGCUGCGCaCGcGGUUU-GUCGUGGUC- -5'
5513 3' -55.6 NC_001798.1 + 16540 0.76 0.400049
Target:  5'- gCGuuGgGUGCGCCAAauccgcguaccgGCGGCGCCAGc -3'
miRNA:   3'- aGCugCgCACGCGGUU------------UGUCGUGGUC- -5'
5513 3' -55.6 NC_001798.1 + 16840 0.68 0.850021
Target:  5'- gCGAUgGCGUGCaugacGCCGGGCGGCaagguGCCAa -3'
miRNA:   3'- aGCUG-CGCACG-----CGGUUUGUCG-----UGGUc -5'
5513 3' -55.6 NC_001798.1 + 19284 0.66 0.906704
Target:  5'- aCGGCGUGgugGUGCC---CGGCgACCGGg -3'
miRNA:   3'- aGCUGCGCa--CGCGGuuuGUCG-UGGUC- -5'
5513 3' -55.6 NC_001798.1 + 20283 0.66 0.912763
Target:  5'- aCGuGCGCG-GCcCCAGGCGGguCCGGc -3'
miRNA:   3'- aGC-UGCGCaCGcGGUUUGUCguGGUC- -5'
5513 3' -55.6 NC_001798.1 + 21833 0.73 0.570193
Target:  5'- aUGACGCGgGCcCCGGGCagGGCGCCAGu -3'
miRNA:   3'- aGCUGCGCaCGcGGUUUG--UCGUGGUC- -5'
5513 3' -55.6 NC_001798.1 + 21970 0.73 0.590535
Target:  5'- aUGACGCGgGCcCCGGGCagGGCGCCAGc -3'
miRNA:   3'- aGCUGCGCaCGcGGUUUG--UCGUGGUC- -5'
5513 3' -55.6 NC_001798.1 + 23482 0.67 0.865501
Target:  5'- aCGACGCcgcccGCGCCcccgcCAGCGCCGc -3'
miRNA:   3'- aGCUGCGca---CGCGGuuu--GUCGUGGUc -5'
5513 3' -55.6 NC_001798.1 + 23746 0.68 0.825329
Target:  5'- cCGACGCGgccuccgGCGCCuucuACGcGCGCUAc -3'
miRNA:   3'- aGCUGCGCa------CGCGGuu--UGU-CGUGGUc -5'
5513 3' -55.6 NC_001798.1 + 23927 0.67 0.89388
Target:  5'- -gGGCGCcccgGCGCCcguGugGGCGCCGa -3'
miRNA:   3'- agCUGCGca--CGCGGu--UugUCGUGGUc -5'
5513 3' -55.6 NC_001798.1 + 23961 0.67 0.887121
Target:  5'- gCGACGCG-GCGCa--GCAGUACg-- -3'
miRNA:   3'- aGCUGCGCaCGCGguuUGUCGUGguc -5'
5513 3' -55.6 NC_001798.1 + 24041 0.66 0.912763
Target:  5'- cCG-CGCGUgGCGCCcggGGACguGGCGCUGGa -3'
miRNA:   3'- aGCuGCGCA-CGCGG---UUUG--UCGUGGUC- -5'
5513 3' -55.6 NC_001798.1 + 24435 0.66 0.912763
Target:  5'- aCGAgCGCGcgGUGCCcgccggcuACGGCGCCGc -3'
miRNA:   3'- aGCU-GCGCa-CGCGGuu------UGUCGUGGUc -5'
5513 3' -55.6 NC_001798.1 + 24543 0.69 0.76192
Target:  5'- aCGACGaCG-GCGCCGgcggugguGGCGGCgGCCGGc -3'
miRNA:   3'- aGCUGC-GCaCGCGGU--------UUGUCG-UGGUC- -5'
5513 3' -55.6 NC_001798.1 + 24750 0.66 0.924163
Target:  5'- cCGACGCGccccgccugcGCGCCuGGCuGCGCgAGc -3'
miRNA:   3'- aGCUGCGCa---------CGCGGuUUGuCGUGgUC- -5'
5513 3' -55.6 NC_001798.1 + 25088 0.66 0.900409
Target:  5'- -gGGCGC---CGCCGGGCGGCGCCc- -3'
miRNA:   3'- agCUGCGcacGCGGUUUGUCGUGGuc -5'
5513 3' -55.6 NC_001798.1 + 25494 0.67 0.89388
Target:  5'- cUCGGgccCGC-UGCGCCGcGCGGCggccuggaugcGCCAGg -3'
miRNA:   3'- -AGCU---GCGcACGCGGUuUGUCG-----------UGGUC- -5'
5513 3' -55.6 NC_001798.1 + 25946 0.67 0.880134
Target:  5'- cCGGCa-GUGCGCCGugcgcuggccGGCGGCGCgGGa -3'
miRNA:   3'- aGCUGcgCACGCGGU----------UUGUCGUGgUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.