Results 41 - 60 of 78 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5514 | 5' | -58.9 | NC_001798.1 | + | 31146 | 0.68 | 0.6917 |
Target: 5'- cGG-CgCGgGGGCGGCGg-UGCGGGgGCg -3' miRNA: 3'- -CCaG-GCgCCCGUCGUagACGUCCaCG- -5' |
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5514 | 5' | -58.9 | NC_001798.1 | + | 108835 | 0.68 | 0.681777 |
Target: 5'- uGGcCCGUGGGCgucuggacgacgGGCGggCUGgcguuCGGGUGCg -3' miRNA: 3'- -CCaGGCGCCCG------------UCGUa-GAC-----GUCCACG- -5' |
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5514 | 5' | -58.9 | NC_001798.1 | + | 113320 | 0.68 | 0.681777 |
Target: 5'- uGG-CCGCGGGCAuGUAUUa-CGGGUGg -3' miRNA: 3'- -CCaGGCGCCCGU-CGUAGacGUCCACg -5' |
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5514 | 5' | -58.9 | NC_001798.1 | + | 15462 | 0.68 | 0.681777 |
Target: 5'- gGGUCgCGUGGGUAGaCGUggGCGGGgggGUc -3' miRNA: 3'- -CCAG-GCGCCCGUC-GUAgaCGUCCa--CG- -5' |
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5514 | 5' | -58.9 | NC_001798.1 | + | 27019 | 0.68 | 0.671814 |
Target: 5'- gGGUCgGgCGGGCgGGgGUCggGCGGGcgGCa -3' miRNA: 3'- -CCAGgC-GCCCG-UCgUAGa-CGUCCa-CG- -5' |
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5514 | 5' | -58.9 | NC_001798.1 | + | 36503 | 0.68 | 0.671814 |
Target: 5'- ---aCGCGGGCGGCcgg-GCGGGgGCg -3' miRNA: 3'- ccagGCGCCCGUCGuagaCGUCCaCG- -5' |
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5514 | 5' | -58.9 | NC_001798.1 | + | 135442 | 0.68 | 0.671814 |
Target: 5'- cGGUCUGC-GGCGGCAccggggcugcguUCUGgGGGcUGUu -3' miRNA: 3'- -CCAGGCGcCCGUCGU------------AGACgUCC-ACG- -5' |
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5514 | 5' | -58.9 | NC_001798.1 | + | 42563 | 0.68 | 0.651803 |
Target: 5'- cGGUUCGCuGGGCgucgccgcuGGUAUCUGUucGUGUa -3' miRNA: 3'- -CCAGGCG-CCCG---------UCGUAGACGucCACG- -5' |
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5514 | 5' | -58.9 | NC_001798.1 | + | 32233 | 0.68 | 0.651803 |
Target: 5'- -cUCUGCGGGCGGgG-CUGguGGgaGCg -3' miRNA: 3'- ccAGGCGCCCGUCgUaGACguCCa-CG- -5' |
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5514 | 5' | -58.9 | NC_001798.1 | + | 108115 | 0.68 | 0.650801 |
Target: 5'- cGGUCUGUGGGUGGUgauggggGUCcUGguGG-GCg -3' miRNA: 3'- -CCAGGCGCCCGUCG-------UAG-ACguCCaCG- -5' |
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5514 | 5' | -58.9 | NC_001798.1 | + | 148431 | 0.69 | 0.641772 |
Target: 5'- cGGgg-GUGGGCacgGGCGUaagUGCGGGUGCa -3' miRNA: 3'- -CCaggCGCCCG---UCGUAg--ACGUCCACG- -5' |
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5514 | 5' | -58.9 | NC_001798.1 | + | 1777 | 0.69 | 0.641772 |
Target: 5'- --aCgGCGGGCAGCAcCUcGCAGGccagguagGCg -3' miRNA: 3'- ccaGgCGCCCGUCGUaGA-CGUCCa-------CG- -5' |
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5514 | 5' | -58.9 | NC_001798.1 | + | 83843 | 0.69 | 0.631733 |
Target: 5'- cGGUCCccgucCGGGCGGCG-CUgGCGGGcccgagGCg -3' miRNA: 3'- -CCAGGc----GCCCGUCGUaGA-CGUCCa-----CG- -5' |
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5514 | 5' | -58.9 | NC_001798.1 | + | 146558 | 0.69 | 0.631733 |
Target: 5'- uGG-CCGCGGGcCAGCAgacgggCcGCGGGccaGCa -3' miRNA: 3'- -CCaGGCGCCC-GUCGUa-----GaCGUCCa--CG- -5' |
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5514 | 5' | -58.9 | NC_001798.1 | + | 76956 | 0.69 | 0.631733 |
Target: 5'- cGGcgCUGCGGGCGGac-CUGUGGGgGCu -3' miRNA: 3'- -CCa-GGCGCCCGUCguaGACGUCCaCG- -5' |
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5514 | 5' | -58.9 | NC_001798.1 | + | 149240 | 0.69 | 0.621694 |
Target: 5'- uGGcCCGCGGG-GGCGUCgccggccggcGCGGGcGCg -3' miRNA: 3'- -CCaGGCGCCCgUCGUAGa---------CGUCCaCG- -5' |
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5514 | 5' | -58.9 | NC_001798.1 | + | 149735 | 0.69 | 0.601646 |
Target: 5'- --cCCGCGGcGCAGCAgc-GCGGGgGCc -3' miRNA: 3'- ccaGGCGCC-CGUCGUagaCGUCCaCG- -5' |
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5514 | 5' | -58.9 | NC_001798.1 | + | 27347 | 0.7 | 0.571753 |
Target: 5'- cGUgUGCGGGCgGGCGggUGCuuGGUGCa -3' miRNA: 3'- cCAgGCGCCCG-UCGUagACGu-CCACG- -5' |
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5514 | 5' | -58.9 | NC_001798.1 | + | 148296 | 0.7 | 0.561863 |
Target: 5'- aGGUgUGCGGGCGGgGUggGguGaGUGCg -3' miRNA: 3'- -CCAgGCGCCCGUCgUAgaCguC-CACG- -5' |
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5514 | 5' | -58.9 | NC_001798.1 | + | 62275 | 0.7 | 0.55202 |
Target: 5'- aGGcCCGcCGGGCGGCccg-GCGGGaGCg -3' miRNA: 3'- -CCaGGC-GCCCGUCGuagaCGUCCaCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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