miRNA display CGI


Results 41 - 60 of 78 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5514 5' -58.9 NC_001798.1 + 52164 0.72 0.466406
Target:  5'- --cCCGCGGGaggccGCGUUUGCGGG-GCg -3'
miRNA:   3'- ccaGGCGCCCgu---CGUAGACGUCCaCG- -5'
5514 5' -58.9 NC_001798.1 + 56047 0.66 0.786885
Target:  5'- --aCCGCGGGCuugaaUAUCgggGCGGG-GCg -3'
miRNA:   3'- ccaGGCGCCCGuc---GUAGa--CGUCCaCG- -5'
5514 5' -58.9 NC_001798.1 + 56406 0.67 0.74043
Target:  5'- gGGUCCcgcgGCGGG-GGCugguggCUGCcguGGUGCu -3'
miRNA:   3'- -CCAGG----CGCCCgUCGua----GACGu--CCACG- -5'
5514 5' -58.9 NC_001798.1 + 60244 0.76 0.265772
Target:  5'- --cUCGCGGGCGGCAaaggugacGCAGGUGCg -3'
miRNA:   3'- ccaGGCGCCCGUCGUaga-----CGUCCACG- -5'
5514 5' -58.9 NC_001798.1 + 62275 0.7 0.55202
Target:  5'- aGGcCCGcCGGGCGGCccg-GCGGGaGCg -3'
miRNA:   3'- -CCaGGC-GCCCGUCGuagaCGUCCaCG- -5'
5514 5' -58.9 NC_001798.1 + 65073 0.66 0.794923
Target:  5'- --gCCGCGGGUgcacuggGGCGUgggUUGUAGcGUGCu -3'
miRNA:   3'- ccaGGCGCCCG-------UCGUA---GACGUC-CACG- -5'
5514 5' -58.9 NC_001798.1 + 68347 0.77 0.230697
Target:  5'- -cUCUGCGaaGGCGGCGUaugUGCAGGUGCg -3'
miRNA:   3'- ccAGGCGC--CCGUCGUAg--ACGUCCACG- -5'
5514 5' -58.9 NC_001798.1 + 69199 0.67 0.74043
Target:  5'- aGGUCgGUGGGguGCc---GCAGG-GCc -3'
miRNA:   3'- -CCAGgCGCCCguCGuagaCGUCCaCG- -5'
5514 5' -58.9 NC_001798.1 + 72327 0.67 0.759345
Target:  5'- cGGcCCGgGGGguGC---UGCAGGaGCu -3'
miRNA:   3'- -CCaGGCgCCCguCGuagACGUCCaCG- -5'
5514 5' -58.9 NC_001798.1 + 76956 0.69 0.631733
Target:  5'- cGGcgCUGCGGGCGGac-CUGUGGGgGCu -3'
miRNA:   3'- -CCa-GGCGCCCGUCguaGACGUCCaCG- -5'
5514 5' -58.9 NC_001798.1 + 77585 0.66 0.813221
Target:  5'- --cCCaGCGGGC-GCGccCUGCAGGaGCu -3'
miRNA:   3'- ccaGG-CGCCCGuCGUa-GACGUCCaCG- -5'
5514 5' -58.9 NC_001798.1 + 81043 0.66 0.795809
Target:  5'- cGGUuuGUGGGCAGCGag-GCcaccgAGGaGCu -3'
miRNA:   3'- -CCAggCGCCCGUCGUagaCG-----UCCaCG- -5'
5514 5' -58.9 NC_001798.1 + 83843 0.69 0.631733
Target:  5'- cGGUCCccgucCGGGCGGCG-CUgGCGGGcccgagGCg -3'
miRNA:   3'- -CCAGGc----GCCCGUCGUaGA-CGUCCa-----CG- -5'
5514 5' -58.9 NC_001798.1 + 84502 0.67 0.711395
Target:  5'- cGUCCccCGGGCGGCcgCcGUAGG-GCu -3'
miRNA:   3'- cCAGGc-GCCCGUCGuaGaCGUCCaCG- -5'
5514 5' -58.9 NC_001798.1 + 90721 0.76 0.253623
Target:  5'- -aUCgCGCGGGgcaCGGCA-CUGCAGGUGCc -3'
miRNA:   3'- ccAG-GCGCCC---GUCGUaGACGUCCACG- -5'
5514 5' -58.9 NC_001798.1 + 97754 0.74 0.34105
Target:  5'- --gCUGCGGGuCAGCGUCcacgGCgAGGUGCu -3'
miRNA:   3'- ccaGGCGCCC-GUCGUAGa---CG-UCCACG- -5'
5514 5' -58.9 NC_001798.1 + 104999 0.66 0.795809
Target:  5'- cGGcgCUGCGGGUGGUcagggggaaGUCcGCGauGGUGCg -3'
miRNA:   3'- -CCa-GGCGCCCGUCG---------UAGaCGU--CCACG- -5'
5514 5' -58.9 NC_001798.1 + 108115 0.68 0.650801
Target:  5'- cGGUCUGUGGGUGGUgauggggGUCcUGguGG-GCg -3'
miRNA:   3'- -CCAGGCGCCCGUCG-------UAG-ACguCCaCG- -5'
5514 5' -58.9 NC_001798.1 + 108835 0.68 0.681777
Target:  5'- uGGcCCGUGGGCgucuggacgacgGGCGggCUGgcguuCGGGUGCg -3'
miRNA:   3'- -CCaGGCGCCCG------------UCGUa-GAC-----GUCCACG- -5'
5514 5' -58.9 NC_001798.1 + 113320 0.68 0.681777
Target:  5'- uGG-CCGCGGGCAuGUAUUa-CGGGUGg -3'
miRNA:   3'- -CCaGGCGCCCGU-CGUAGacGUCCACg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.