miRNA display CGI


Results 21 - 40 of 78 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5514 5' -58.9 NC_001798.1 + 26518 0.67 0.73083
Target:  5'- uGGccgCgGCGGGCGGCGgcgUGgAGGUGg -3'
miRNA:   3'- -CCa--GgCGCCCGUCGUag-ACgUCCACg -5'
5514 5' -58.9 NC_001798.1 + 26930 0.71 0.49425
Target:  5'- gGGUCgGgCGGGCGGgGUCgggcggGCGGGggucggGCg -3'
miRNA:   3'- -CCAGgC-GCCCGUCgUAGa-----CGUCCa-----CG- -5'
5514 5' -58.9 NC_001798.1 + 27019 0.68 0.671814
Target:  5'- gGGUCgGgCGGGCgGGgGUCggGCGGGcgGCa -3'
miRNA:   3'- -CCAGgC-GCCCG-UCgUAGa-CGUCCa-CG- -5'
5514 5' -58.9 NC_001798.1 + 27347 0.7 0.571753
Target:  5'- cGUgUGCGGGCgGGCGggUGCuuGGUGCa -3'
miRNA:   3'- cCAgGCGCCCG-UCGUagACGu-CCACG- -5'
5514 5' -58.9 NC_001798.1 + 27382 0.66 0.80459
Target:  5'- uGGUCUGCgaGGGCgAGC----GguGGUGCg -3'
miRNA:   3'- -CCAGGCG--CCCG-UCGuagaCguCCACG- -5'
5514 5' -58.9 NC_001798.1 + 29910 0.67 0.759345
Target:  5'- gGGUggUCGCGGGCGGUGggcUCggggGCGGGacGCu -3'
miRNA:   3'- -CCA--GGCGCCCGUCGU---AGa---CGUCCa-CG- -5'
5514 5' -58.9 NC_001798.1 + 30944 0.66 0.795809
Target:  5'- gGGUCgGgCGGGgGGCGg--GCGGGggucggGCg -3'
miRNA:   3'- -CCAGgC-GCCCgUCGUagaCGUCCa-----CG- -5'
5514 5' -58.9 NC_001798.1 + 31146 0.68 0.6917
Target:  5'- cGG-CgCGgGGGCGGCGg-UGCGGGgGCg -3'
miRNA:   3'- -CCaG-GCgCCCGUCGUagACGUCCaCG- -5'
5514 5' -58.9 NC_001798.1 + 31275 0.67 0.73083
Target:  5'- gGGUCUGgGGGCGGCccugccGUC-GCGGccgucGUGCc -3'
miRNA:   3'- -CCAGGCgCCCGUCG------UAGaCGUC-----CACG- -5'
5514 5' -58.9 NC_001798.1 + 31336 0.66 0.813221
Target:  5'- cGGcCgGCGGGgGGCGcgcGCAGGcGCg -3'
miRNA:   3'- -CCaGgCGCCCgUCGUagaCGUCCaCG- -5'
5514 5' -58.9 NC_001798.1 + 32061 0.67 0.708456
Target:  5'- cGUCCGCGGGCgccgcgcccccgucGGCGUCUccgucguccCAGGccGCg -3'
miRNA:   3'- cCAGGCGCCCG--------------UCGUAGAc--------GUCCa-CG- -5'
5514 5' -58.9 NC_001798.1 + 32233 0.68 0.651803
Target:  5'- -cUCUGCGGGCGGgG-CUGguGGgaGCg -3'
miRNA:   3'- ccAGGCGCCCGUCgUaGACguCCa-CG- -5'
5514 5' -58.9 NC_001798.1 + 34581 0.71 0.5037
Target:  5'- cGGcUCaCGCGGcGCGGCGUCUcGguGGgacGCg -3'
miRNA:   3'- -CC-AG-GCGCC-CGUCGUAGA-CguCCa--CG- -5'
5514 5' -58.9 NC_001798.1 + 36072 0.67 0.721149
Target:  5'- aGG-CUGCGGGC-GCGgg-GUAGGUGg -3'
miRNA:   3'- -CCaGGCGCCCGuCGUagaCGUCCACg -5'
5514 5' -58.9 NC_001798.1 + 36276 0.66 0.80459
Target:  5'- cGGg--GUGGGCGGCGgggGgGGGUGCc -3'
miRNA:   3'- -CCaggCGCCCGUCGUagaCgUCCACG- -5'
5514 5' -58.9 NC_001798.1 + 36503 0.68 0.671814
Target:  5'- ---aCGCGGGCGGCcgg-GCGGGgGCg -3'
miRNA:   3'- ccagGCGCCCGUCGuagaCGUCCaCG- -5'
5514 5' -58.9 NC_001798.1 + 42563 0.68 0.651803
Target:  5'- cGGUUCGCuGGGCgucgccgcuGGUAUCUGUucGUGUa -3'
miRNA:   3'- -CCAGGCG-CCCG---------UCGUAGACGucCACG- -5'
5514 5' -58.9 NC_001798.1 + 48716 0.66 0.80459
Target:  5'- aGGUuuG-GGGCGGCA-CUG-GGGUGa -3'
miRNA:   3'- -CCAggCgCCCGUCGUaGACgUCCACg -5'
5514 5' -58.9 NC_001798.1 + 51459 0.7 0.531527
Target:  5'- cGGUCgagauucuCGCGGGCcGCGUgucgggcccggagCUGCAGGcgGCa -3'
miRNA:   3'- -CCAG--------GCGCCCGuCGUA-------------GACGUCCa-CG- -5'
5514 5' -58.9 NC_001798.1 + 51803 0.66 0.803718
Target:  5'- -aUCgUGCGGGUGGCgaucaacggguggGUCUGCGGGacGCg -3'
miRNA:   3'- ccAG-GCGCCCGUCG-------------UAGACGUCCa-CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.