miRNA display CGI


Results 41 - 60 of 78 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5514 5' -58.9 NC_001798.1 + 31146 0.68 0.6917
Target:  5'- cGG-CgCGgGGGCGGCGg-UGCGGGgGCg -3'
miRNA:   3'- -CCaG-GCgCCCGUCGUagACGUCCaCG- -5'
5514 5' -58.9 NC_001798.1 + 108835 0.68 0.681777
Target:  5'- uGGcCCGUGGGCgucuggacgacgGGCGggCUGgcguuCGGGUGCg -3'
miRNA:   3'- -CCaGGCGCCCG------------UCGUa-GAC-----GUCCACG- -5'
5514 5' -58.9 NC_001798.1 + 113320 0.68 0.681777
Target:  5'- uGG-CCGCGGGCAuGUAUUa-CGGGUGg -3'
miRNA:   3'- -CCaGGCGCCCGU-CGUAGacGUCCACg -5'
5514 5' -58.9 NC_001798.1 + 15462 0.68 0.681777
Target:  5'- gGGUCgCGUGGGUAGaCGUggGCGGGgggGUc -3'
miRNA:   3'- -CCAG-GCGCCCGUC-GUAgaCGUCCa--CG- -5'
5514 5' -58.9 NC_001798.1 + 27019 0.68 0.671814
Target:  5'- gGGUCgGgCGGGCgGGgGUCggGCGGGcgGCa -3'
miRNA:   3'- -CCAGgC-GCCCG-UCgUAGa-CGUCCa-CG- -5'
5514 5' -58.9 NC_001798.1 + 36503 0.68 0.671814
Target:  5'- ---aCGCGGGCGGCcgg-GCGGGgGCg -3'
miRNA:   3'- ccagGCGCCCGUCGuagaCGUCCaCG- -5'
5514 5' -58.9 NC_001798.1 + 135442 0.68 0.671814
Target:  5'- cGGUCUGC-GGCGGCAccggggcugcguUCUGgGGGcUGUu -3'
miRNA:   3'- -CCAGGCGcCCGUCGU------------AGACgUCC-ACG- -5'
5514 5' -58.9 NC_001798.1 + 42563 0.68 0.651803
Target:  5'- cGGUUCGCuGGGCgucgccgcuGGUAUCUGUucGUGUa -3'
miRNA:   3'- -CCAGGCG-CCCG---------UCGUAGACGucCACG- -5'
5514 5' -58.9 NC_001798.1 + 32233 0.68 0.651803
Target:  5'- -cUCUGCGGGCGGgG-CUGguGGgaGCg -3'
miRNA:   3'- ccAGGCGCCCGUCgUaGACguCCa-CG- -5'
5514 5' -58.9 NC_001798.1 + 108115 0.68 0.650801
Target:  5'- cGGUCUGUGGGUGGUgauggggGUCcUGguGG-GCg -3'
miRNA:   3'- -CCAGGCGCCCGUCG-------UAG-ACguCCaCG- -5'
5514 5' -58.9 NC_001798.1 + 148431 0.69 0.641772
Target:  5'- cGGgg-GUGGGCacgGGCGUaagUGCGGGUGCa -3'
miRNA:   3'- -CCaggCGCCCG---UCGUAg--ACGUCCACG- -5'
5514 5' -58.9 NC_001798.1 + 1777 0.69 0.641772
Target:  5'- --aCgGCGGGCAGCAcCUcGCAGGccagguagGCg -3'
miRNA:   3'- ccaGgCGCCCGUCGUaGA-CGUCCa-------CG- -5'
5514 5' -58.9 NC_001798.1 + 83843 0.69 0.631733
Target:  5'- cGGUCCccgucCGGGCGGCG-CUgGCGGGcccgagGCg -3'
miRNA:   3'- -CCAGGc----GCCCGUCGUaGA-CGUCCa-----CG- -5'
5514 5' -58.9 NC_001798.1 + 146558 0.69 0.631733
Target:  5'- uGG-CCGCGGGcCAGCAgacgggCcGCGGGccaGCa -3'
miRNA:   3'- -CCaGGCGCCC-GUCGUa-----GaCGUCCa--CG- -5'
5514 5' -58.9 NC_001798.1 + 76956 0.69 0.631733
Target:  5'- cGGcgCUGCGGGCGGac-CUGUGGGgGCu -3'
miRNA:   3'- -CCa-GGCGCCCGUCguaGACGUCCaCG- -5'
5514 5' -58.9 NC_001798.1 + 149240 0.69 0.621694
Target:  5'- uGGcCCGCGGG-GGCGUCgccggccggcGCGGGcGCg -3'
miRNA:   3'- -CCaGGCGCCCgUCGUAGa---------CGUCCaCG- -5'
5514 5' -58.9 NC_001798.1 + 149735 0.69 0.601646
Target:  5'- --cCCGCGGcGCAGCAgc-GCGGGgGCc -3'
miRNA:   3'- ccaGGCGCC-CGUCGUagaCGUCCaCG- -5'
5514 5' -58.9 NC_001798.1 + 27347 0.7 0.571753
Target:  5'- cGUgUGCGGGCgGGCGggUGCuuGGUGCa -3'
miRNA:   3'- cCAgGCGCCCG-UCGUagACGu-CCACG- -5'
5514 5' -58.9 NC_001798.1 + 148296 0.7 0.561863
Target:  5'- aGGUgUGCGGGCGGgGUggGguGaGUGCg -3'
miRNA:   3'- -CCAgGCGCCCGUCgUAgaCguC-CACG- -5'
5514 5' -58.9 NC_001798.1 + 62275 0.7 0.55202
Target:  5'- aGGcCCGcCGGGCGGCccg-GCGGGaGCg -3'
miRNA:   3'- -CCaGGC-GCCCGUCGuagaCGUCCaCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.