Results 1 - 20 of 22 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
5515 | 3' | -54.1 | NC_001798.1 | + | 63545 | 0.66 | 0.96388 |
Target: 5'- uCGUUCGA-CUGGCAggugACCCGCaGGa- -3' miRNA: 3'- -GCAAGCUaGAUCGUg---UGGGUGcCCag -5' |
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5515 | 3' | -54.1 | NC_001798.1 | + | 71096 | 0.66 | 0.960407 |
Target: 5'- ---gCGGUCggcguGCGCGCCCcCGGGg- -3' miRNA: 3'- gcaaGCUAGau---CGUGUGGGuGCCCag -5' |
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5515 | 3' | -54.1 | NC_001798.1 | + | 27041 | 0.66 | 0.95671 |
Target: 5'- gCGggCGGcacgUCUccCGCGCCCGCGGGg- -3' miRNA: 3'- -GCaaGCU----AGAucGUGUGGGUGCCCag -5' |
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5515 | 3' | -54.1 | NC_001798.1 | + | 153488 | 0.66 | 0.95671 |
Target: 5'- gCGcggCGAga-AGCACACCUGCGGG-Cg -3' miRNA: 3'- -GCaa-GCUagaUCGUGUGGGUGCCCaG- -5' |
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5515 | 3' | -54.1 | NC_001798.1 | + | 15185 | 0.66 | 0.955943 |
Target: 5'- uGUUCGGggggugggggggCUGGCgagccggggggaGCGUCCGCGGGUCc -3' miRNA: 3'- gCAAGCUa-----------GAUCG------------UGUGGGUGCCCAG- -5' |
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5515 | 3' | -54.1 | NC_001798.1 | + | 17206 | 0.66 | 0.952784 |
Target: 5'- gCGcgCGAUCUGguugucGCACGgCCGCcuuucgGGGUCg -3' miRNA: 3'- -GCaaGCUAGAU------CGUGUgGGUG------CCCAG- -5' |
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5515 | 3' | -54.1 | NC_001798.1 | + | 120043 | 0.66 | 0.952784 |
Target: 5'- cCGggUCGGUCUgcaGGCGCACCguCACGGa-- -3' miRNA: 3'- -GCa-AGCUAGA---UCGUGUGG--GUGCCcag -5' |
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5515 | 3' | -54.1 | NC_001798.1 | + | 149312 | 0.66 | 0.952784 |
Target: 5'- cCGUggaaGUCcAGCGCGCCCACcaGGGUg -3' miRNA: 3'- -GCAagc-UAGaUCGUGUGGGUG--CCCAg -5' |
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5515 | 3' | -54.1 | NC_001798.1 | + | 135514 | 0.67 | 0.944232 |
Target: 5'- aCGgcgCGAUCcAGgACGCCCGcCGGGcCc -3' miRNA: 3'- -GCaa-GCUAGaUCgUGUGGGU-GCCCaG- -5' |
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5515 | 3' | -54.1 | NC_001798.1 | + | 137356 | 0.67 | 0.942868 |
Target: 5'- gCGUUCGAcgccccagcccuggUCcGGCGCACCCcuCGGcGUUc -3' miRNA: 3'- -GCAAGCU--------------AGaUCGUGUGGGu-GCC-CAG- -5' |
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5515 | 3' | -54.1 | NC_001798.1 | + | 86263 | 0.67 | 0.9396 |
Target: 5'- aCGgcCGGgggCgcgGGCGCACCgGCGGGg- -3' miRNA: 3'- -GCaaGCUa--Ga--UCGUGUGGgUGCCCag -5' |
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5515 | 3' | -54.1 | NC_001798.1 | + | 51614 | 0.67 | 0.934726 |
Target: 5'- gCGUUCGggCUGuCGCGCgUggGGGUCa -3' miRNA: 3'- -GCAAGCuaGAUcGUGUGgGugCCCAG- -5' |
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5515 | 3' | -54.1 | NC_001798.1 | + | 2467 | 0.67 | 0.929611 |
Target: 5'- gCGggUCGGggccCUcGGCGgGCCgGCGGGUCa -3' miRNA: 3'- -GCa-AGCUa---GA-UCGUgUGGgUGCCCAG- -5' |
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5515 | 3' | -54.1 | NC_001798.1 | + | 127282 | 0.68 | 0.91281 |
Target: 5'- gCGgUCGAUCUc-UACGCCCugGGG-Ca -3' miRNA: 3'- -GCaAGCUAGAucGUGUGGGugCCCaG- -5' |
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5515 | 3' | -54.1 | NC_001798.1 | + | 71952 | 0.68 | 0.91281 |
Target: 5'- gGUUCGuccCUuacguGCugGCCCugGuGGUCg -3' miRNA: 3'- gCAAGCua-GAu----CGugUGGGugC-CCAG- -5' |
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5515 | 3' | -54.1 | NC_001798.1 | + | 141184 | 0.68 | 0.906727 |
Target: 5'- gCGUUCaAUUUuaAGCACcuggGCCCGCGGGa- -3' miRNA: 3'- -GCAAGcUAGA--UCGUG----UGGGUGCCCag -5' |
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5515 | 3' | -54.1 | NC_001798.1 | + | 16303 | 0.7 | 0.841695 |
Target: 5'- aGUUCGAUCUGGUACucgaaugucUCCGCGgcgcGGUCc -3' miRNA: 3'- gCAAGCUAGAUCGUGu--------GGGUGC----CCAG- -5' |
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5515 | 3' | -54.1 | NC_001798.1 | + | 50695 | 0.7 | 0.833419 |
Target: 5'- gGUccCGuUCUcGCAUuuGCCCGCGGGUCu -3' miRNA: 3'- gCAa-GCuAGAuCGUG--UGGGUGCCCAG- -5' |
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5515 | 3' | -54.1 | NC_001798.1 | + | 93290 | 0.7 | 0.833419 |
Target: 5'- gGggCGuacCUGGCGCGCgCCGCGGGcCu -3' miRNA: 3'- gCaaGCua-GAUCGUGUG-GGUGCCCaG- -5' |
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5515 | 3' | -54.1 | NC_001798.1 | + | 105766 | 0.71 | 0.780146 |
Target: 5'- ---aUGAgUCcccGCGCGCCCGCGGGUCc -3' miRNA: 3'- gcaaGCU-AGau-CGUGUGGGUGCCCAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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