miRNA display CGI


Results 1 - 20 of 22 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5515 3' -54.1 NC_001798.1 + 63545 0.66 0.96388
Target:  5'- uCGUUCGA-CUGGCAggugACCCGCaGGa- -3'
miRNA:   3'- -GCAAGCUaGAUCGUg---UGGGUGcCCag -5'
5515 3' -54.1 NC_001798.1 + 71096 0.66 0.960407
Target:  5'- ---gCGGUCggcguGCGCGCCCcCGGGg- -3'
miRNA:   3'- gcaaGCUAGau---CGUGUGGGuGCCCag -5'
5515 3' -54.1 NC_001798.1 + 27041 0.66 0.95671
Target:  5'- gCGggCGGcacgUCUccCGCGCCCGCGGGg- -3'
miRNA:   3'- -GCaaGCU----AGAucGUGUGGGUGCCCag -5'
5515 3' -54.1 NC_001798.1 + 153488 0.66 0.95671
Target:  5'- gCGcggCGAga-AGCACACCUGCGGG-Cg -3'
miRNA:   3'- -GCaa-GCUagaUCGUGUGGGUGCCCaG- -5'
5515 3' -54.1 NC_001798.1 + 15185 0.66 0.955943
Target:  5'- uGUUCGGggggugggggggCUGGCgagccggggggaGCGUCCGCGGGUCc -3'
miRNA:   3'- gCAAGCUa-----------GAUCG------------UGUGGGUGCCCAG- -5'
5515 3' -54.1 NC_001798.1 + 17206 0.66 0.952784
Target:  5'- gCGcgCGAUCUGguugucGCACGgCCGCcuuucgGGGUCg -3'
miRNA:   3'- -GCaaGCUAGAU------CGUGUgGGUG------CCCAG- -5'
5515 3' -54.1 NC_001798.1 + 120043 0.66 0.952784
Target:  5'- cCGggUCGGUCUgcaGGCGCACCguCACGGa-- -3'
miRNA:   3'- -GCa-AGCUAGA---UCGUGUGG--GUGCCcag -5'
5515 3' -54.1 NC_001798.1 + 149312 0.66 0.952784
Target:  5'- cCGUggaaGUCcAGCGCGCCCACcaGGGUg -3'
miRNA:   3'- -GCAagc-UAGaUCGUGUGGGUG--CCCAg -5'
5515 3' -54.1 NC_001798.1 + 135514 0.67 0.944232
Target:  5'- aCGgcgCGAUCcAGgACGCCCGcCGGGcCc -3'
miRNA:   3'- -GCaa-GCUAGaUCgUGUGGGU-GCCCaG- -5'
5515 3' -54.1 NC_001798.1 + 137356 0.67 0.942868
Target:  5'- gCGUUCGAcgccccagcccuggUCcGGCGCACCCcuCGGcGUUc -3'
miRNA:   3'- -GCAAGCU--------------AGaUCGUGUGGGu-GCC-CAG- -5'
5515 3' -54.1 NC_001798.1 + 86263 0.67 0.9396
Target:  5'- aCGgcCGGgggCgcgGGCGCACCgGCGGGg- -3'
miRNA:   3'- -GCaaGCUa--Ga--UCGUGUGGgUGCCCag -5'
5515 3' -54.1 NC_001798.1 + 51614 0.67 0.934726
Target:  5'- gCGUUCGggCUGuCGCGCgUggGGGUCa -3'
miRNA:   3'- -GCAAGCuaGAUcGUGUGgGugCCCAG- -5'
5515 3' -54.1 NC_001798.1 + 2467 0.67 0.929611
Target:  5'- gCGggUCGGggccCUcGGCGgGCCgGCGGGUCa -3'
miRNA:   3'- -GCa-AGCUa---GA-UCGUgUGGgUGCCCAG- -5'
5515 3' -54.1 NC_001798.1 + 127282 0.68 0.91281
Target:  5'- gCGgUCGAUCUc-UACGCCCugGGG-Ca -3'
miRNA:   3'- -GCaAGCUAGAucGUGUGGGugCCCaG- -5'
5515 3' -54.1 NC_001798.1 + 71952 0.68 0.91281
Target:  5'- gGUUCGuccCUuacguGCugGCCCugGuGGUCg -3'
miRNA:   3'- gCAAGCua-GAu----CGugUGGGugC-CCAG- -5'
5515 3' -54.1 NC_001798.1 + 141184 0.68 0.906727
Target:  5'- gCGUUCaAUUUuaAGCACcuggGCCCGCGGGa- -3'
miRNA:   3'- -GCAAGcUAGA--UCGUG----UGGGUGCCCag -5'
5515 3' -54.1 NC_001798.1 + 16303 0.7 0.841695
Target:  5'- aGUUCGAUCUGGUACucgaaugucUCCGCGgcgcGGUCc -3'
miRNA:   3'- gCAAGCUAGAUCGUGu--------GGGUGC----CCAG- -5'
5515 3' -54.1 NC_001798.1 + 50695 0.7 0.833419
Target:  5'- gGUccCGuUCUcGCAUuuGCCCGCGGGUCu -3'
miRNA:   3'- gCAa-GCuAGAuCGUG--UGGGUGCCCAG- -5'
5515 3' -54.1 NC_001798.1 + 93290 0.7 0.833419
Target:  5'- gGggCGuacCUGGCGCGCgCCGCGGGcCu -3'
miRNA:   3'- gCaaGCua-GAUCGUGUG-GGUGCCCaG- -5'
5515 3' -54.1 NC_001798.1 + 105766 0.71 0.780146
Target:  5'- ---aUGAgUCcccGCGCGCCCGCGGGUCc -3'
miRNA:   3'- gcaaGCU-AGau-CGUGUGGGUGCCCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.