miRNA display CGI


Results 1 - 20 of 33 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5515 5' -56.9 NC_001798.1 + 110283 0.66 0.909577
Target:  5'- cUCGGcCUCGUGGGggCCGuguuUCuGCGCu- -3'
miRNA:   3'- -AGCU-GAGCGCCCuaGGCu---AG-CGUGca -5'
5515 5' -56.9 NC_001798.1 + 81098 0.66 0.907788
Target:  5'- aCGuuCUCGCGGcGAgcgccgCCGAcgcggaccccuucuUCGCGCGg -3'
miRNA:   3'- aGCu-GAGCGCC-CUa-----GGCU--------------AGCGUGCa -5'
5515 5' -56.9 NC_001798.1 + 153989 0.66 0.903537
Target:  5'- cUCGAC-CGCGGuucCCGAgUCGUACGc -3'
miRNA:   3'- -AGCUGaGCGCCcuaGGCU-AGCGUGCa -5'
5515 5' -56.9 NC_001798.1 + 83987 0.66 0.903537
Target:  5'- cUCGGCggCGCGacacaGGAUCCGccgCGUGCGa -3'
miRNA:   3'- -AGCUGa-GCGC-----CCUAGGCua-GCGUGCa -5'
5515 5' -56.9 NC_001798.1 + 59675 0.66 0.903537
Target:  5'- cUCGGCUCGCGuGGGggCGGcggGCACGc -3'
miRNA:   3'- -AGCUGAGCGC-CCUagGCUag-CGUGCa -5'
5515 5' -56.9 NC_001798.1 + 67491 0.66 0.897272
Target:  5'- -aGGC-CGCGGGG-CCGGggggaUCGCugGa -3'
miRNA:   3'- agCUGaGCGCCCUaGGCU-----AGCGugCa -5'
5515 5' -56.9 NC_001798.1 + 111526 0.66 0.88813
Target:  5'- cCGACUCgGCGuGGGgcuccuccagcgcCCGGUCGCcgGCGUa -3'
miRNA:   3'- aGCUGAG-CGC-CCUa------------GGCUAGCG--UGCA- -5'
5515 5' -56.9 NC_001798.1 + 134066 0.66 0.884081
Target:  5'- gCGACgccgCGgGGGAggCGcgCGCGCGc -3'
miRNA:   3'- aGCUGa---GCgCCCUagGCuaGCGUGCa -5'
5515 5' -56.9 NC_001798.1 + 20378 0.66 0.884081
Target:  5'- gCGGCaCGCaGGAUCCGAaagaGCugGUu -3'
miRNA:   3'- aGCUGaGCGcCCUAGGCUag--CGugCA- -5'
5515 5' -56.9 NC_001798.1 + 90684 0.66 0.875045
Target:  5'- gCGACUCGCGcagggccgccgccaGGcgCUcgcagaGAUCGCGCGg -3'
miRNA:   3'- aGCUGAGCGC--------------CCuaGG------CUAGCGUGCa -5'
5515 5' -56.9 NC_001798.1 + 2992 0.67 0.862698
Target:  5'- cCGGCcCGCGGGccCCGggCGCGgGg -3'
miRNA:   3'- aGCUGaGCGCCCuaGGCuaGCGUgCa -5'
5515 5' -56.9 NC_001798.1 + 36495 0.67 0.847436
Target:  5'- cCGGCgcgaCGCGGGcggCCGGgcgggggCGCGCGg -3'
miRNA:   3'- aGCUGa---GCGCCCua-GGCUa------GCGUGCa -5'
5515 5' -56.9 NC_001798.1 + 36311 0.67 0.847436
Target:  5'- gCGGCggggCGCGGGccggggCCGGggcUCGCugGUc -3'
miRNA:   3'- aGCUGa---GCGCCCua----GGCU---AGCGugCA- -5'
5515 5' -56.9 NC_001798.1 + 27255 0.67 0.847436
Target:  5'- gCGGC-CGCGGGAccgcagccCCGuggCGCGCGg -3'
miRNA:   3'- aGCUGaGCGCCCUa-------GGCua-GCGUGCa -5'
5515 5' -56.9 NC_001798.1 + 16491 0.68 0.831423
Target:  5'- aCGGCaggCGCGGGugagCCGGUaGUACGUc -3'
miRNA:   3'- aGCUGa--GCGCCCua--GGCUAgCGUGCA- -5'
5515 5' -56.9 NC_001798.1 + 58703 0.68 0.831423
Target:  5'- gCGGCggCGCGGGggUCGAUCcaccaguaGCGCGc -3'
miRNA:   3'- aGCUGa-GCGCCCuaGGCUAG--------CGUGCa -5'
5515 5' -56.9 NC_001798.1 + 85257 0.68 0.831423
Target:  5'- gCGGCcgCGCGGGG-CCG--CGCGCGa -3'
miRNA:   3'- aGCUGa-GCGCCCUaGGCuaGCGUGCa -5'
5515 5' -56.9 NC_001798.1 + 11583 0.68 0.831423
Target:  5'- cUCGAUUCGCuGG--CCGAUCGCGUGg -3'
miRNA:   3'- -AGCUGAGCGcCCuaGGCUAGCGUGCa -5'
5515 5' -56.9 NC_001798.1 + 47574 0.68 0.831423
Target:  5'- gUCGugUcCGCGGGAagCGc-CGCGCGg -3'
miRNA:   3'- -AGCugA-GCGCCCUagGCuaGCGUGCa -5'
5515 5' -56.9 NC_001798.1 + 35598 0.68 0.823151
Target:  5'- gCGGC-CGCGGGcUCCGGgggcucCGCACu- -3'
miRNA:   3'- aGCUGaGCGCCCuAGGCUa-----GCGUGca -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.