Results 1 - 20 of 33 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
5515 | 5' | -56.9 | NC_001798.1 | + | 110283 | 0.66 | 0.909577 |
Target: 5'- cUCGGcCUCGUGGGggCCGuguuUCuGCGCu- -3' miRNA: 3'- -AGCU-GAGCGCCCuaGGCu---AG-CGUGca -5' |
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5515 | 5' | -56.9 | NC_001798.1 | + | 81098 | 0.66 | 0.907788 |
Target: 5'- aCGuuCUCGCGGcGAgcgccgCCGAcgcggaccccuucuUCGCGCGg -3' miRNA: 3'- aGCu-GAGCGCC-CUa-----GGCU--------------AGCGUGCa -5' |
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5515 | 5' | -56.9 | NC_001798.1 | + | 153989 | 0.66 | 0.903537 |
Target: 5'- cUCGAC-CGCGGuucCCGAgUCGUACGc -3' miRNA: 3'- -AGCUGaGCGCCcuaGGCU-AGCGUGCa -5' |
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5515 | 5' | -56.9 | NC_001798.1 | + | 83987 | 0.66 | 0.903537 |
Target: 5'- cUCGGCggCGCGacacaGGAUCCGccgCGUGCGa -3' miRNA: 3'- -AGCUGa-GCGC-----CCUAGGCua-GCGUGCa -5' |
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5515 | 5' | -56.9 | NC_001798.1 | + | 59675 | 0.66 | 0.903537 |
Target: 5'- cUCGGCUCGCGuGGGggCGGcggGCACGc -3' miRNA: 3'- -AGCUGAGCGC-CCUagGCUag-CGUGCa -5' |
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5515 | 5' | -56.9 | NC_001798.1 | + | 67491 | 0.66 | 0.897272 |
Target: 5'- -aGGC-CGCGGGG-CCGGggggaUCGCugGa -3' miRNA: 3'- agCUGaGCGCCCUaGGCU-----AGCGugCa -5' |
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5515 | 5' | -56.9 | NC_001798.1 | + | 111526 | 0.66 | 0.88813 |
Target: 5'- cCGACUCgGCGuGGGgcuccuccagcgcCCGGUCGCcgGCGUa -3' miRNA: 3'- aGCUGAG-CGC-CCUa------------GGCUAGCG--UGCA- -5' |
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5515 | 5' | -56.9 | NC_001798.1 | + | 134066 | 0.66 | 0.884081 |
Target: 5'- gCGACgccgCGgGGGAggCGcgCGCGCGc -3' miRNA: 3'- aGCUGa---GCgCCCUagGCuaGCGUGCa -5' |
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5515 | 5' | -56.9 | NC_001798.1 | + | 20378 | 0.66 | 0.884081 |
Target: 5'- gCGGCaCGCaGGAUCCGAaagaGCugGUu -3' miRNA: 3'- aGCUGaGCGcCCUAGGCUag--CGugCA- -5' |
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5515 | 5' | -56.9 | NC_001798.1 | + | 90684 | 0.66 | 0.875045 |
Target: 5'- gCGACUCGCGcagggccgccgccaGGcgCUcgcagaGAUCGCGCGg -3' miRNA: 3'- aGCUGAGCGC--------------CCuaGG------CUAGCGUGCa -5' |
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5515 | 5' | -56.9 | NC_001798.1 | + | 2992 | 0.67 | 0.862698 |
Target: 5'- cCGGCcCGCGGGccCCGggCGCGgGg -3' miRNA: 3'- aGCUGaGCGCCCuaGGCuaGCGUgCa -5' |
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5515 | 5' | -56.9 | NC_001798.1 | + | 36495 | 0.67 | 0.847436 |
Target: 5'- cCGGCgcgaCGCGGGcggCCGGgcgggggCGCGCGg -3' miRNA: 3'- aGCUGa---GCGCCCua-GGCUa------GCGUGCa -5' |
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5515 | 5' | -56.9 | NC_001798.1 | + | 36311 | 0.67 | 0.847436 |
Target: 5'- gCGGCggggCGCGGGccggggCCGGggcUCGCugGUc -3' miRNA: 3'- aGCUGa---GCGCCCua----GGCU---AGCGugCA- -5' |
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5515 | 5' | -56.9 | NC_001798.1 | + | 27255 | 0.67 | 0.847436 |
Target: 5'- gCGGC-CGCGGGAccgcagccCCGuggCGCGCGg -3' miRNA: 3'- aGCUGaGCGCCCUa-------GGCua-GCGUGCa -5' |
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5515 | 5' | -56.9 | NC_001798.1 | + | 16491 | 0.68 | 0.831423 |
Target: 5'- aCGGCaggCGCGGGugagCCGGUaGUACGUc -3' miRNA: 3'- aGCUGa--GCGCCCua--GGCUAgCGUGCA- -5' |
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5515 | 5' | -56.9 | NC_001798.1 | + | 58703 | 0.68 | 0.831423 |
Target: 5'- gCGGCggCGCGGGggUCGAUCcaccaguaGCGCGc -3' miRNA: 3'- aGCUGa-GCGCCCuaGGCUAG--------CGUGCa -5' |
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5515 | 5' | -56.9 | NC_001798.1 | + | 85257 | 0.68 | 0.831423 |
Target: 5'- gCGGCcgCGCGGGG-CCG--CGCGCGa -3' miRNA: 3'- aGCUGa-GCGCCCUaGGCuaGCGUGCa -5' |
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5515 | 5' | -56.9 | NC_001798.1 | + | 11583 | 0.68 | 0.831423 |
Target: 5'- cUCGAUUCGCuGG--CCGAUCGCGUGg -3' miRNA: 3'- -AGCUGAGCGcCCuaGGCUAGCGUGCa -5' |
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5515 | 5' | -56.9 | NC_001798.1 | + | 47574 | 0.68 | 0.831423 |
Target: 5'- gUCGugUcCGCGGGAagCGc-CGCGCGg -3' miRNA: 3'- -AGCugA-GCGCCCUagGCuaGCGUGCa -5' |
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5515 | 5' | -56.9 | NC_001798.1 | + | 35598 | 0.68 | 0.823151 |
Target: 5'- gCGGC-CGCGGGcUCCGGgggcucCGCACu- -3' miRNA: 3'- aGCUGaGCGCCCuAGGCUa-----GCGUGca -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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