miRNA display CGI


Results 21 - 33 of 33 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5515 5' -56.9 NC_001798.1 + 83987 0.66 0.903537
Target:  5'- cUCGGCggCGCGacacaGGAUCCGccgCGUGCGa -3'
miRNA:   3'- -AGCUGa-GCGC-----CCUAGGCua-GCGUGCa -5'
5515 5' -56.9 NC_001798.1 + 85257 0.68 0.831423
Target:  5'- gCGGCcgCGCGGGG-CCG--CGCGCGa -3'
miRNA:   3'- aGCUGa-GCGCCCUaGGCuaGCGUGCa -5'
5515 5' -56.9 NC_001798.1 + 90684 0.66 0.875045
Target:  5'- gCGACUCGCGcagggccgccgccaGGcgCUcgcagaGAUCGCGCGg -3'
miRNA:   3'- aGCUGAGCGC--------------CCuaGG------CUAGCGUGCa -5'
5515 5' -56.9 NC_001798.1 + 97253 0.68 0.806115
Target:  5'- gCGGCggGCGGaGcacUUCGAUCGCGCGUu -3'
miRNA:   3'- aGCUGagCGCC-Cu--AGGCUAGCGUGCA- -5'
5515 5' -56.9 NC_001798.1 + 110283 0.66 0.909577
Target:  5'- cUCGGcCUCGUGGGggCCGuguuUCuGCGCu- -3'
miRNA:   3'- -AGCU-GAGCGCCCuaGGCu---AG-CGUGca -5'
5515 5' -56.9 NC_001798.1 + 111526 0.66 0.88813
Target:  5'- cCGACUCgGCGuGGGgcuccuccagcgcCCGGUCGCcgGCGUa -3'
miRNA:   3'- aGCUGAG-CGC-CCUa------------GGCUAGCG--UGCA- -5'
5515 5' -56.9 NC_001798.1 + 114859 0.69 0.770291
Target:  5'- cCGACacgCGCGGGcggCCGGUCG-ACGg -3'
miRNA:   3'- aGCUGa--GCGCCCua-GGCUAGCgUGCa -5'
5515 5' -56.9 NC_001798.1 + 120396 0.71 0.673662
Target:  5'- gCGAUgucCGCGGGggCCGAUcccgugagCGCGCGg -3'
miRNA:   3'- aGCUGa--GCGCCCuaGGCUA--------GCGUGCa -5'
5515 5' -56.9 NC_001798.1 + 134066 0.66 0.884081
Target:  5'- gCGACgccgCGgGGGAggCGcgCGCGCGc -3'
miRNA:   3'- aGCUGa---GCgCCCUagGCuaGCGUGCa -5'
5515 5' -56.9 NC_001798.1 + 135076 0.69 0.779446
Target:  5'- cCGcCUUuCGGGAagCGGUCGCGCGg -3'
miRNA:   3'- aGCuGAGcGCCCUagGCUAGCGUGCa -5'
5515 5' -56.9 NC_001798.1 + 139379 0.7 0.693519
Target:  5'- -gGGCUCGCGGGAcgUCCGG--GCACc- -3'
miRNA:   3'- agCUGAGCGCCCU--AGGCUagCGUGca -5'
5515 5' -56.9 NC_001798.1 + 150427 0.73 0.515106
Target:  5'- gCGGCggCGCGGGGcggacUCCGGaCGCGCGg -3'
miRNA:   3'- aGCUGa-GCGCCCU-----AGGCUaGCGUGCa -5'
5515 5' -56.9 NC_001798.1 + 153989 0.66 0.903537
Target:  5'- cUCGAC-CGCGGuucCCGAgUCGUACGc -3'
miRNA:   3'- -AGCUGaGCGCCcuaGGCU-AGCGUGCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.