miRNA display CGI


Results 21 - 33 of 33 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5515 5' -56.9 NC_001798.1 + 58703 0.68 0.831423
Target:  5'- gCGGCggCGCGGGggUCGAUCcaccaguaGCGCGc -3'
miRNA:   3'- aGCUGa-GCGCCCuaGGCUAG--------CGUGCa -5'
5515 5' -56.9 NC_001798.1 + 50652 0.69 0.752578
Target:  5'- aCGGCUCGUggugcuGGGGUCCGcguauaaaggcaggCGCGCGg -3'
miRNA:   3'- aGCUGAGCG------CCCUAGGCua------------GCGUGCa -5'
5515 5' -56.9 NC_001798.1 + 47574 0.68 0.831423
Target:  5'- gUCGugUcCGCGGGAagCGc-CGCGCGg -3'
miRNA:   3'- -AGCugA-GCGCCCUagGCuaGCGUGCa -5'
5515 5' -56.9 NC_001798.1 + 38234 0.68 0.806115
Target:  5'- -aGGCaCGCGGGGUCCGuuUUGguCGUg -3'
miRNA:   3'- agCUGaGCGCCCUAGGCu-AGCguGCA- -5'
5515 5' -56.9 NC_001798.1 + 36495 0.67 0.847436
Target:  5'- cCGGCgcgaCGCGGGcggCCGGgcgggggCGCGCGg -3'
miRNA:   3'- aGCUGa---GCGCCCua-GGCUa------GCGUGCa -5'
5515 5' -56.9 NC_001798.1 + 36311 0.67 0.847436
Target:  5'- gCGGCggggCGCGGGccggggCCGGggcUCGCugGUc -3'
miRNA:   3'- aGCUGa---GCGCCCua----GGCU---AGCGugCA- -5'
5515 5' -56.9 NC_001798.1 + 35598 0.68 0.823151
Target:  5'- gCGGC-CGCGGGcUCCGGgggcucCGCACu- -3'
miRNA:   3'- aGCUGaGCGCCCuAGGCUa-----GCGUGca -5'
5515 5' -56.9 NC_001798.1 + 27255 0.67 0.847436
Target:  5'- gCGGC-CGCGGGAccgcagccCCGuggCGCGCGg -3'
miRNA:   3'- aGCUGaGCGCCCUa-------GGCua-GCGUGCa -5'
5515 5' -56.9 NC_001798.1 + 20378 0.66 0.884081
Target:  5'- gCGGCaCGCaGGAUCCGAaagaGCugGUu -3'
miRNA:   3'- aGCUGaGCGcCCUAGGCUag--CGugCA- -5'
5515 5' -56.9 NC_001798.1 + 16491 0.68 0.831423
Target:  5'- aCGGCaggCGCGGGugagCCGGUaGUACGUc -3'
miRNA:   3'- aGCUGa--GCGCCCua--GGCUAgCGUGCA- -5'
5515 5' -56.9 NC_001798.1 + 16176 0.72 0.593556
Target:  5'- gCGGCcCGCGGGGaCCGGggggaCGCACGg -3'
miRNA:   3'- aGCUGaGCGCCCUaGGCUa----GCGUGCa -5'
5515 5' -56.9 NC_001798.1 + 11583 0.68 0.831423
Target:  5'- cUCGAUUCGCuGG--CCGAUCGCGUGg -3'
miRNA:   3'- -AGCUGAGCGcCCuaGGCUAGCGUGCa -5'
5515 5' -56.9 NC_001798.1 + 2992 0.67 0.862698
Target:  5'- cCGGCcCGCGGGccCCGggCGCGgGg -3'
miRNA:   3'- aGCUGaGCGCCCuaGGCuaGCGUgCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.