miRNA display CGI


Results 81 - 100 of 256 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5516 3' -70 NC_001798.1 + 81379 0.67 0.280977
Target:  5'- -aCCaCCggcgaGCCCGUCCCCCCucgcaugugGGCCuGGa -3'
miRNA:   3'- caGG-GGg----CGGGCAGGGGGG---------CCGG-CCg -5'
5516 3' -70 NC_001798.1 + 111741 0.67 0.280977
Target:  5'- -gCCCCCGCgcccCCGgCCCcgguCCCGGCCaucgguugggGGCg -3'
miRNA:   3'- caGGGGGCG----GGCaGGG----GGGCCGG----------CCG- -5'
5516 3' -70 NC_001798.1 + 81817 0.68 0.275061
Target:  5'- -cUCCCCGCCCcgGUCgCCCCGucGCCGcuuccGCg -3'
miRNA:   3'- caGGGGGCGGG--CAGgGGGGC--CGGC-----CG- -5'
5516 3' -70 NC_001798.1 + 73330 0.68 0.275061
Target:  5'- -gCCCgCGCgCCGUCgacgCgCCCGGCgGGCc -3'
miRNA:   3'- caGGGgGCG-GGCAG----GgGGGCCGgCCG- -5'
5516 3' -70 NC_001798.1 + 3981 0.68 0.275061
Target:  5'- cGUCCagcucgaCCGCCgGggCCgCCCGGCCGugaaGCg -3'
miRNA:   3'- -CAGGg------GGCGGgCa-GGgGGGCCGGC----CG- -5'
5516 3' -70 NC_001798.1 + 91951 0.68 0.275061
Target:  5'- uUgCCCaacCCCGggcCCCCCCGuCCGGCg -3'
miRNA:   3'- cAgGGGgc-GGGCa--GGGGGGCcGGCCG- -5'
5516 3' -70 NC_001798.1 + 82253 0.68 0.275061
Target:  5'- -cCCCCCGCCUuuggCCCCa-GGcCCGGUu -3'
miRNA:   3'- caGGGGGCGGGca--GGGGggCC-GGCCG- -5'
5516 3' -70 NC_001798.1 + 84491 0.68 0.269245
Target:  5'- -aCCCUCGaaCGcgUCCCCCGGgCGGCc -3'
miRNA:   3'- caGGGGGCggGCa-GGGGGGCCgGCCG- -5'
5516 3' -70 NC_001798.1 + 29812 0.68 0.269245
Target:  5'- -cCCCgagcggCCGCCgCGgcagaCCCCCGGCaCGGUg -3'
miRNA:   3'- caGGG------GGCGG-GCag---GGGGGCCG-GCCG- -5'
5516 3' -70 NC_001798.1 + 81852 0.68 0.269245
Target:  5'- cGUCCuCCCGaccagCCGcCCaCCCCGGaguccgcgcccCCGGCu -3'
miRNA:   3'- -CAGG-GGGCg----GGCaGG-GGGGCC-----------GGCCG- -5'
5516 3' -70 NC_001798.1 + 49004 0.68 0.268669
Target:  5'- gGUCCCaagaacaccccagCCGCCCcUCCgcuguacgCCaCCGGUCGGCu -3'
miRNA:   3'- -CAGGG-------------GGCGGGcAGG--------GG-GGCCGGCCG- -5'
5516 3' -70 NC_001798.1 + 29776 0.68 0.263529
Target:  5'- -aCCCCgGCCCGgcacgagCUCCCgGGCggacccCGGCc -3'
miRNA:   3'- caGGGGgCGGGCa------GGGGGgCCG------GCCG- -5'
5516 3' -70 NC_001798.1 + 22456 0.68 0.263529
Target:  5'- -cCCCCCGCCCcgcgCgCCCCGaggacuauaucaGCCaGGCg -3'
miRNA:   3'- caGGGGGCGGGca--GgGGGGC------------CGG-CCG- -5'
5516 3' -70 NC_001798.1 + 31459 0.68 0.263529
Target:  5'- cUCCCCCGCCgucuccgcgcCG-CCCCgCgGGCCccgGGCc -3'
miRNA:   3'- cAGGGGGCGG----------GCaGGGG-GgCCGG---CCG- -5'
5516 3' -70 NC_001798.1 + 118902 0.68 0.263529
Target:  5'- cUCgUCCCGCCCGUCUUCgagGGCCaGGCg -3'
miRNA:   3'- cAG-GGGGCGGGCAGGGGgg-CCGG-CCG- -5'
5516 3' -70 NC_001798.1 + 115352 0.68 0.263529
Target:  5'- --gCCCCGCgCGUUCCCUCc-CCGGCa -3'
miRNA:   3'- cagGGGGCGgGCAGGGGGGccGGCCG- -5'
5516 3' -70 NC_001798.1 + 152496 0.68 0.263529
Target:  5'- uUCCCCCaauaGCCgCG-CgCCCCGGCgGGg -3'
miRNA:   3'- cAGGGGG----CGG-GCaGgGGGGCCGgCCg -5'
5516 3' -70 NC_001798.1 + 54474 0.68 0.262963
Target:  5'- -nCCCCCaCUCGaCCCCCgCGGCCccucggaggugcaGGCg -3'
miRNA:   3'- caGGGGGcGGGCaGGGGG-GCCGG-------------CCG- -5'
5516 3' -70 NC_001798.1 + 87715 0.68 0.262963
Target:  5'- uUCCUCCGCcguagcgCCGg-CCCCCG-CCGGCc -3'
miRNA:   3'- cAGGGGGCG-------GGCagGGGGGCcGGCCG- -5'
5516 3' -70 NC_001798.1 + 121452 0.68 0.257911
Target:  5'- cUCCUgCCGCgCGUCCCCagcgCgGGCgGGCu -3'
miRNA:   3'- cAGGG-GGCGgGCAGGGG----GgCCGgCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.