miRNA display CGI


Results 61 - 80 of 256 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5516 3' -70 NC_001798.1 + 73122 0.67 0.293111
Target:  5'- cUCCgUgGaCCUGUCUCCCCaggGGCUGGCc -3'
miRNA:   3'- cAGGgGgC-GGGCAGGGGGG---CCGGCCG- -5'
5516 3' -70 NC_001798.1 + 81914 0.67 0.293111
Target:  5'- -cCUUCCGCCCGgccCCgCCUCGGCUcGCg -3'
miRNA:   3'- caGGGGGCGGGCa--GG-GGGGCCGGcCG- -5'
5516 3' -70 NC_001798.1 + 28285 0.67 0.293111
Target:  5'- -gCCCCCuUCCGcCCCaCCUGGCgcuaCGGCu -3'
miRNA:   3'- caGGGGGcGGGCaGGG-GGGCCG----GCCG- -5'
5516 3' -70 NC_001798.1 + 138160 0.67 0.293111
Target:  5'- -gCCCCCGgguCCUGggggcgcgaCCCgCGGCCGGUg -3'
miRNA:   3'- caGGGGGC---GGGCag-------GGGgGCCGGCCG- -5'
5516 3' -70 NC_001798.1 + 151990 0.67 0.293111
Target:  5'- cUCCCCC-CCUGUCCCCCgCucuCgGGCu -3'
miRNA:   3'- cAGGGGGcGGGCAGGGGG-Gcc-GgCCG- -5'
5516 3' -70 NC_001798.1 + 81311 0.67 0.293111
Target:  5'- --aCCCCG-CUGcCCCCCCcGCaCGGCa -3'
miRNA:   3'- cagGGGGCgGGCaGGGGGGcCG-GCCG- -5'
5516 3' -70 NC_001798.1 + 131329 0.67 0.289429
Target:  5'- -aCCaCgCCGCCCG-CgCCCCGGgcgcgacgucggcgcCCGGCg -3'
miRNA:   3'- caGG-G-GGCGGGCaGgGGGGCC---------------GGCCG- -5'
5516 3' -70 NC_001798.1 + 27854 0.67 0.286994
Target:  5'- cUCUCCCGCCCcgacgCgCUCCGGCUccgGGCc -3'
miRNA:   3'- cAGGGGGCGGGca---GgGGGGCCGG---CCG- -5'
5516 3' -70 NC_001798.1 + 148236 0.67 0.286994
Target:  5'- -cCCCUCGCCCcgaugggaGUCUCCCCGcaGCCagGGUa -3'
miRNA:   3'- caGGGGGCGGG--------CAGGGGGGC--CGG--CCG- -5'
5516 3' -70 NC_001798.1 + 127970 0.67 0.286994
Target:  5'- cGUCCCCgGCCC-UCUCUgaggccucauCCGGCCcGCc -3'
miRNA:   3'- -CAGGGGgCGGGcAGGGG----------GGCCGGcCG- -5'
5516 3' -70 NC_001798.1 + 146995 0.67 0.286994
Target:  5'- gGUCCgCCUcuuGCCuCGgggaCCCCCgGGCgGGCc -3'
miRNA:   3'- -CAGG-GGG---CGG-GCa---GGGGGgCCGgCCG- -5'
5516 3' -70 NC_001798.1 + 20703 0.67 0.286994
Target:  5'- uUCCCuCCGauuCCGUCCCCgUGGUCGa- -3'
miRNA:   3'- cAGGG-GGCg--GGCAGGGGgGCCGGCcg -5'
5516 3' -70 NC_001798.1 + 91845 0.67 0.286994
Target:  5'- cUCCCagcaCGCcguacauauaCCGgCCgCCCCGGCCGaGCa -3'
miRNA:   3'- cAGGGg---GCG----------GGCaGG-GGGGCCGGC-CG- -5'
5516 3' -70 NC_001798.1 + 126270 0.67 0.286994
Target:  5'- cGUCCggacgCCCaagcgGCCCcUCCCCCCGaGaCGGCg -3'
miRNA:   3'- -CAGG-----GGG-----CGGGcAGGGGGGC-CgGCCG- -5'
5516 3' -70 NC_001798.1 + 43094 0.67 0.285178
Target:  5'- -gCCgCCGCCgCGUCCgcgaccacggucgcUUCCGGCgGGCg -3'
miRNA:   3'- caGGgGGCGG-GCAGG--------------GGGGCCGgCCG- -5'
5516 3' -70 NC_001798.1 + 19479 0.67 0.280977
Target:  5'- -aCCCCCagaacCCCGggcCCCCgCUGGCCguuGGCg -3'
miRNA:   3'- caGGGGGc----GGGCa--GGGG-GGCCGG---CCG- -5'
5516 3' -70 NC_001798.1 + 31673 0.67 0.280977
Target:  5'- ---gCCCGCgCCG-CCCgCCGuGCCGGUg -3'
miRNA:   3'- caggGGGCG-GGCaGGGgGGC-CGGCCG- -5'
5516 3' -70 NC_001798.1 + 81379 0.67 0.280977
Target:  5'- -aCCaCCggcgaGCCCGUCCCCCCucgcaugugGGCCuGGa -3'
miRNA:   3'- caGG-GGg----CGGGCAGGGGGG---------CCGG-CCg -5'
5516 3' -70 NC_001798.1 + 111741 0.67 0.280977
Target:  5'- -gCCCCCGCgcccCCGgCCCcgguCCCGGCCaucgguugggGGCg -3'
miRNA:   3'- caGGGGGCG----GGCaGGG----GGGCCGG----------CCG- -5'
5516 3' -70 NC_001798.1 + 145973 0.67 0.280977
Target:  5'- -aCCCCgCGCCCGcagCCUCCGGCa-GCa -3'
miRNA:   3'- caGGGG-GCGGGCag-GGGGGCCGgcCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.