miRNA display CGI


Results 41 - 60 of 256 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5516 3' -70 NC_001798.1 + 78820 0.67 0.318597
Target:  5'- -gCCgCCCGCggcgacggccCCGg-CCCCUGGCgCGGCa -3'
miRNA:   3'- caGG-GGGCG----------GGCagGGGGGCCG-GCCG- -5'
5516 3' -70 NC_001798.1 + 116968 0.67 0.318597
Target:  5'- -gCCaaCgCGCCCaacuUCCCCCCGGCCcugcgcgaccuGGCg -3'
miRNA:   3'- caGG--GgGCGGGc---AGGGGGGCCGG-----------CCG- -5'
5516 3' -70 NC_001798.1 + 127781 0.67 0.318597
Target:  5'- --aCCCCGCCCGcgaccccgauagUCCCCCgaagCGGCCc-- -3'
miRNA:   3'- cagGGGGCGGGC------------AGGGGG----GCCGGccg -5'
5516 3' -70 NC_001798.1 + 74603 0.67 0.318597
Target:  5'- cUCCCCgCGCCCacccacGUCcagaCCCCUGGggccgaCCGGCc -3'
miRNA:   3'- cAGGGG-GCGGG------CAG----GGGGGCC------GGCCG- -5'
5516 3' -70 NC_001798.1 + 3251 0.67 0.31467
Target:  5'- -aCCCCCGCggcgccguagCCGgcgggcaccgcgcgCUCgUCGGCCGGCg -3'
miRNA:   3'- caGGGGGCG----------GGCa-------------GGGgGGCCGGCCG- -5'
5516 3' -70 NC_001798.1 + 145730 0.67 0.312073
Target:  5'- -gCCCCgGCCCGcgCCCCgCCGccacacccaCGGCa -3'
miRNA:   3'- caGGGGgCGGGCa-GGGG-GGCcg-------GCCG- -5'
5516 3' -70 NC_001798.1 + 34820 0.67 0.312073
Target:  5'- -gCCCCCGCgcuCCG-CCgggggCCCgGGCCGGa -3'
miRNA:   3'- caGGGGGCG---GGCaGG-----GGGgCCGGCCg -5'
5516 3' -70 NC_001798.1 + 148492 0.67 0.312073
Target:  5'- uUCCuCCCaCCCGUCCCCgggGGCagagGGCg -3'
miRNA:   3'- cAGG-GGGcGGGCAGGGGgg-CCGg---CCG- -5'
5516 3' -70 NC_001798.1 + 21795 0.67 0.312073
Target:  5'- -cCCCCCGUCCGggCCCgCCUcgGGgCGGa -3'
miRNA:   3'- caGGGGGCGGGCa-GGG-GGG--CCgGCCg -5'
5516 3' -70 NC_001798.1 + 128830 0.67 0.312073
Target:  5'- -aCCCCgCGgacCCCGgcgCCCCCgCGGCCuccGCg -3'
miRNA:   3'- caGGGG-GC---GGGCa--GGGGG-GCCGGc--CG- -5'
5516 3' -70 NC_001798.1 + 148622 0.67 0.312073
Target:  5'- -aCCCCC-CCCcUCCucccuCCCCGaGCCaGGCg -3'
miRNA:   3'- caGGGGGcGGGcAGG-----GGGGC-CGG-CCG- -5'
5516 3' -70 NC_001798.1 + 70143 0.67 0.305651
Target:  5'- -cCCCCCGUCCGcUCCaCCCCcaaacGGaCCGuuGCa -3'
miRNA:   3'- caGGGGGCGGGC-AGG-GGGG-----CC-GGC--CG- -5'
5516 3' -70 NC_001798.1 + 137914 0.67 0.304378
Target:  5'- -gCCUCCGCCgGgcggcccgcgccUCCCCCGGCCGc- -3'
miRNA:   3'- caGGGGGCGGgCa-----------GGGGGGCCGGCcg -5'
5516 3' -70 NC_001798.1 + 147932 0.67 0.29933
Target:  5'- -gCCCguaCGCCCaccgCCCCCaCGcGCCGGUc -3'
miRNA:   3'- caGGGg--GCGGGca--GGGGG-GC-CGGCCG- -5'
5516 3' -70 NC_001798.1 + 72134 0.67 0.29933
Target:  5'- -cUCCUCGaaCCGgCCaCCCgGGCCGGCg -3'
miRNA:   3'- caGGGGGCg-GGCaGG-GGGgCCGGCCG- -5'
5516 3' -70 NC_001798.1 + 112180 0.67 0.29933
Target:  5'- cUCCCCCacggGCCgcaCGUCCCgCaGGCCGcGCu -3'
miRNA:   3'- cAGGGGG----CGG---GCAGGGgGgCCGGC-CG- -5'
5516 3' -70 NC_001798.1 + 25177 0.67 0.298078
Target:  5'- -cCCCCCGCCCcgccgacgccgCCgCCgCGGCCGccGCg -3'
miRNA:   3'- caGGGGGCGGGca---------GGgGG-GCCGGC--CG- -5'
5516 3' -70 NC_001798.1 + 29958 0.67 0.297454
Target:  5'- -aCCCCCgGCCCGcUUaagcggucgggggaCCCCCgugGGCCGuGCg -3'
miRNA:   3'- caGGGGG-CGGGC-AG--------------GGGGG---CCGGC-CG- -5'
5516 3' -70 NC_001798.1 + 151990 0.67 0.293111
Target:  5'- cUCCCCC-CCUGUCCCCCgCucuCgGGCu -3'
miRNA:   3'- cAGGGGGcGGGCAGGGGG-Gcc-GgCCG- -5'
5516 3' -70 NC_001798.1 + 138160 0.67 0.293111
Target:  5'- -gCCCCCGgguCCUGggggcgcgaCCCgCGGCCGGUg -3'
miRNA:   3'- caGGGGGC---GGGCag-------GGGgGCCGGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.