miRNA display CGI


Results 41 - 60 of 256 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5516 3' -70 NC_001798.1 + 47962 0.66 0.359878
Target:  5'- --aCCCCGCCCGcggcaggcgaCCCgCCCaGGCCGa- -3'
miRNA:   3'- cagGGGGCGGGCa---------GGG-GGG-CCGGCcg -5'
5516 3' -70 NC_001798.1 + 85304 0.66 0.359878
Target:  5'- gGUCCgcccgcggCCCGCCCGcagaCCCCaCGGCagaGGg -3'
miRNA:   3'- -CAGG--------GGGCGGGCag--GGGG-GCCGg--CCg -5'
5516 3' -70 NC_001798.1 + 101412 0.66 0.359878
Target:  5'- -aCCCCaaaccaacCCCGUCUCCCUGcGaCCGGUc -3'
miRNA:   3'- caGGGGgc------GGGCAGGGGGGC-C-GGCCG- -5'
5516 3' -70 NC_001798.1 + 105073 0.66 0.359878
Target:  5'- -aCUCCCGacgaaCCCGcggCCCCgCGGCCcGCg -3'
miRNA:   3'- caGGGGGC-----GGGCa--GGGGgGCCGGcCG- -5'
5516 3' -70 NC_001798.1 + 116438 0.66 0.359878
Target:  5'- -gCCgCCGacgaCCGgCCgCaCCGGCCGGCc -3'
miRNA:   3'- caGGgGGCg---GGCaGGgG-GGCCGGCCG- -5'
5516 3' -70 NC_001798.1 + 32077 0.66 0.352745
Target:  5'- -gCCCCCGUcggcgucuCCGUCgUCCCaGGCC-GCg -3'
miRNA:   3'- caGGGGGCG--------GGCAGgGGGG-CCGGcCG- -5'
5516 3' -70 NC_001798.1 + 126990 0.66 0.350625
Target:  5'- cGUCCUCgugaUGCUgcgaucggacgcggUGUCgCUCCGGCCGGCc -3'
miRNA:   3'- -CAGGGG----GCGG--------------GCAGgGGGGCCGGCCG- -5'
5516 3' -70 NC_001798.1 + 128232 0.66 0.331952
Target:  5'- cUCCCUCGUCgUGUCgCUggaggCGGCCGGCa -3'
miRNA:   3'- cAGGGGGCGG-GCAGgGGg----GCCGGCCG- -5'
5516 3' -70 NC_001798.1 + 134142 0.66 0.331952
Target:  5'- cUCCCCCGa-CGUCucggCCCCCggGGCCGucGCg -3'
miRNA:   3'- cAGGGGGCggGCAG----GGGGG--CCGGC--CG- -5'
5516 3' -70 NC_001798.1 + 23073 0.66 0.338781
Target:  5'- aUCCCgUCGCC---CCCCCCGGagcgcgaCGGCg -3'
miRNA:   3'- cAGGG-GGCGGgcaGGGGGGCCg------GCCG- -5'
5516 3' -70 NC_001798.1 + 34418 0.66 0.338781
Target:  5'- cUCUUCCGCCCGcCCCCCCccccucuccccGCCGccucaGCa -3'
miRNA:   3'- cAGGGGGCGGGCaGGGGGGc----------CGGC-----CG- -5'
5516 3' -70 NC_001798.1 + 107447 0.66 0.338781
Target:  5'- -aCCCCgCGcCCCGaCCCCgaGGaCGGCg -3'
miRNA:   3'- caGGGG-GC-GGGCaGGGGggCCgGCCG- -5'
5516 3' -70 NC_001798.1 + 134740 0.66 0.338781
Target:  5'- gGUUCUCCGCCCcggcgcugGUCgCCCUCuuCCGGCa -3'
miRNA:   3'- -CAGGGGGCGGG--------CAG-GGGGGccGGCCG- -5'
5516 3' -70 NC_001798.1 + 76914 0.66 0.338781
Target:  5'- -aCCUggccgaugCCGUCCGgggcccCCCCCCGGaagucaCGGCg -3'
miRNA:   3'- caGGG--------GGCGGGCa-----GGGGGGCCg-----GCCG- -5'
5516 3' -70 NC_001798.1 + 125354 0.66 0.338781
Target:  5'- -gCCCCCaaaGUCaCG-CCCCCUGaguugcGCCGGCa -3'
miRNA:   3'- caGGGGG---CGG-GCaGGGGGGC------CGGCCG- -5'
5516 3' -70 NC_001798.1 + 134217 0.66 0.338781
Target:  5'- -gCCCCUGggggaCCCGaCCCUgUGGCgGGCg -3'
miRNA:   3'- caGGGGGC-----GGGCaGGGGgGCCGgCCG- -5'
5516 3' -70 NC_001798.1 + 32218 0.66 0.345713
Target:  5'- cUCCUCCGCCUcUUCCUCUgcgggcggGGCUGGUg -3'
miRNA:   3'- cAGGGGGCGGGcAGGGGGG--------CCGGCCG- -5'
5516 3' -70 NC_001798.1 + 2108 0.66 0.345713
Target:  5'- -gCCCCCggcgcgGCCCGcggccaggUCCUcgCCCGGCagCGGCg -3'
miRNA:   3'- caGGGGG------CGGGC--------AGGG--GGGCCG--GCCG- -5'
5516 3' -70 NC_001798.1 + 35952 0.66 0.345713
Target:  5'- uUCgCCCGCCCGccUCgCCCCGGaCCc-- -3'
miRNA:   3'- cAGgGGGCGGGC--AGgGGGGCC-GGccg -5'
5516 3' -70 NC_001798.1 + 56454 0.66 0.345713
Target:  5'- --aUUCCGUCCGgguaUCCCgCCaGCCGGCa -3'
miRNA:   3'- cagGGGGCGGGC----AGGGgGGcCGGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.