miRNA display CGI


Results 41 - 60 of 256 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5516 3' -70 NC_001798.1 + 31119 0.73 0.110951
Target:  5'- --gUCCCGCCCG-CCCCCCGaagagcgccCCGGCg -3'
miRNA:   3'- cagGGGGCGGGCaGGGGGGCc--------GGCCG- -5'
5516 3' -70 NC_001798.1 + 34871 0.73 0.112807
Target:  5'- uUCCgCCCGgcgccgggcggcuaCCCGggaCCCCCGGCCGGg -3'
miRNA:   3'- cAGG-GGGC--------------GGGCag-GGGGGCCGGCCg -5'
5516 3' -70 NC_001798.1 + 4942 0.73 0.113611
Target:  5'- cGUCCCCCGuCCuCGUCCgccaucgcgaCCUCGGCCccgcGGCc -3'
miRNA:   3'- -CAGGGGGC-GG-GCAGG----------GGGGCCGG----CCG- -5'
5516 3' -70 NC_001798.1 + 23338 0.73 0.11633
Target:  5'- -aCCgCCGCCgGcgcgCCCCCC-GCCGGCg -3'
miRNA:   3'- caGGgGGCGGgCa---GGGGGGcCGGCCG- -5'
5516 3' -70 NC_001798.1 + 86070 0.73 0.119109
Target:  5'- -aCCCCCG-CCGUCUgggagucggggCCCCGGCUGcGCg -3'
miRNA:   3'- caGGGGGCgGGCAGG-----------GGGGCCGGC-CG- -5'
5516 3' -70 NC_001798.1 + 96738 0.73 0.119109
Target:  5'- -gCCCCCGgagcugagcgaCCCGUCCCaCCCGuGCgCGGUc -3'
miRNA:   3'- caGGGGGC-----------GGGCAGGG-GGGC-CG-GCCG- -5'
5516 3' -70 NC_001798.1 + 24707 0.73 0.119109
Target:  5'- -cCCCCgCGCCCGgggCCCgCgGGCgCGGCc -3'
miRNA:   3'- caGGGG-GCGGGCa--GGGgGgCCG-GCCG- -5'
5516 3' -70 NC_001798.1 + 71415 0.73 0.119109
Target:  5'- -gUgCCCGCgCGgacgCCCCCCGGCCacgGGCu -3'
miRNA:   3'- caGgGGGCGgGCa---GGGGGGCCGG---CCG- -5'
5516 3' -70 NC_001798.1 + 126399 0.73 0.119109
Target:  5'- cGUCUCgucgCCGCUCGUCCCCCgaGGCCcccGGCc -3'
miRNA:   3'- -CAGGG----GGCGGGCAGGGGGg-CCGG---CCG- -5'
5516 3' -70 NC_001798.1 + 34553 0.73 0.119109
Target:  5'- -cCCCCCggaGCCUGggUCCCCCGGCggaCGGCu -3'
miRNA:   3'- caGGGGG---CGGGCa-GGGGGGCCG---GCCG- -5'
5516 3' -70 NC_001798.1 + 54833 0.73 0.121092
Target:  5'- -aCCCCCGCCgccgacaccaccgcCGccgCCgCCUGGCCGGCc -3'
miRNA:   3'- caGGGGGCGG--------------GCa--GGgGGGCCGGCCG- -5'
5516 3' -70 NC_001798.1 + 128766 0.73 0.12195
Target:  5'- -gCCCCCGCCCcccagacCCCCCUGGCCu-- -3'
miRNA:   3'- caGGGGGCGGGca-----GGGGGGCCGGccg -5'
5516 3' -70 NC_001798.1 + 21328 0.73 0.12195
Target:  5'- -cCCCCCGgcccCCCGgCCCCCCGGCCn-- -3'
miRNA:   3'- caGGGGGC----GGGCaGGGGGGCCGGccg -5'
5516 3' -70 NC_001798.1 + 75196 0.73 0.124561
Target:  5'- -gCCCgCCGCCCcccggagCCCCCCGGCgccgaccUGGCg -3'
miRNA:   3'- caGGG-GGCGGGca-----GGGGGGCCG-------GCCG- -5'
5516 3' -70 NC_001798.1 + 54451 0.73 0.124855
Target:  5'- -aCCCCCGCCgcUCCCCCgGGCUcGCc -3'
miRNA:   3'- caGGGGGCGGgcAGGGGGgCCGGcCG- -5'
5516 3' -70 NC_001798.1 + 49081 0.72 0.127823
Target:  5'- -gCCCauGCCCGUCCCCCCcG-CGGCc -3'
miRNA:   3'- caGGGggCGGGCAGGGGGGcCgGCCG- -5'
5516 3' -70 NC_001798.1 + 57864 0.72 0.129939
Target:  5'- ---gCCCGCCUGcCCCCCUGGCCuuauacccguccacGGCa -3'
miRNA:   3'- caggGGGCGGGCaGGGGGGCCGG--------------CCG- -5'
5516 3' -70 NC_001798.1 + 21229 0.72 0.133956
Target:  5'- cGUCCCCCcgucccCCCGUCCCCCCGuCCc-- -3'
miRNA:   3'- -CAGGGGGc-----GGGCAGGGGGGCcGGccg -5'
5516 3' -70 NC_001798.1 + 21197 0.72 0.133956
Target:  5'- cGUCCCCCcgucccCCCGUCCCCCCGuCCc-- -3'
miRNA:   3'- -CAGGGGGc-----GGGCAGGGGGGCcGGccg -5'
5516 3' -70 NC_001798.1 + 85239 0.72 0.133956
Target:  5'- cGUCgCgCCCGCCC--CCCCgCGGCCGcGCg -3'
miRNA:   3'- -CAG-G-GGGCGGGcaGGGGgGCCGGC-CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.