miRNA display CGI


Results 21 - 40 of 256 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5516 3' -70 NC_001798.1 + 145497 0.77 0.056489
Target:  5'- -gCCCCCGCCCGgccgccgcgCgCCCCCGcCCGGCc -3'
miRNA:   3'- caGGGGGCGGGCa--------G-GGGGGCcGGCCG- -5'
5516 3' -70 NC_001798.1 + 150891 0.77 0.056489
Target:  5'- -gCCCCCGCaCCGcCgCCCCCGcGCCGGg -3'
miRNA:   3'- caGGGGGCG-GGCaG-GGGGGC-CGGCCg -5'
5516 3' -70 NC_001798.1 + 145455 0.77 0.056489
Target:  5'- -gCCCCCGCCCGgccgccgcgCgCCCCCGcCCGGCc -3'
miRNA:   3'- caGGGGGCGGGCa--------G-GGGGGCcGGCCG- -5'
5516 3' -70 NC_001798.1 + 3823 0.77 0.059315
Target:  5'- cUCCUCCGCCuCGggcgCCCCCCagaGGCCGGg -3'
miRNA:   3'- cAGGGGGCGG-GCa---GGGGGG---CCGGCCg -5'
5516 3' -70 NC_001798.1 + 109021 0.76 0.065384
Target:  5'- -gCCCCCGCggugcuccCCGggCCUCCGGCCGGCc -3'
miRNA:   3'- caGGGGGCG--------GGCagGGGGGCCGGCCG- -5'
5516 3' -70 NC_001798.1 + 5570 0.76 0.06864
Target:  5'- -gCCCCCGCCgG-CCCCaaaggGGCCGGCg -3'
miRNA:   3'- caGGGGGCGGgCaGGGGgg---CCGGCCG- -5'
5516 3' -70 NC_001798.1 + 117015 0.76 0.073817
Target:  5'- cGUCCCCC--UgGUCCCCCCGGCCcugggGGCc -3'
miRNA:   3'- -CAGGGGGcgGgCAGGGGGGCCGG-----CCG- -5'
5516 3' -70 NC_001798.1 + 113602 0.75 0.080718
Target:  5'- aUCCCCuccgCGCCCGUUCUCUgggaaucgccugcgCGGCCGGCg -3'
miRNA:   3'- cAGGGG----GCGGGCAGGGGG--------------GCCGGCCG- -5'
5516 3' -70 NC_001798.1 + 142545 0.75 0.081304
Target:  5'- -cCCCCCGCCCccguaUCCCCaaCGGCgGGCg -3'
miRNA:   3'- caGGGGGCGGGc----AGGGGg-GCCGgCCG- -5'
5516 3' -70 NC_001798.1 + 102520 0.75 0.085315
Target:  5'- uGUCCgUagGCcaCCGUCCCCgCGGCCGGCa -3'
miRNA:   3'- -CAGGgGg-CG--GGCAGGGGgGCCGGCCG- -5'
5516 3' -70 NC_001798.1 + 114067 0.75 0.087391
Target:  5'- -gCUCCUGCCCGcgaCCCCCCGGguuaCCGGUa -3'
miRNA:   3'- caGGGGGCGGGCa--GGGGGGCC----GGCCG- -5'
5516 3' -70 NC_001798.1 + 151115 0.74 0.093909
Target:  5'- -aCCCCCGCCCG-CCCUCaccGUCGGCc -3'
miRNA:   3'- caGGGGGCGGGCaGGGGGgc-CGGCCG- -5'
5516 3' -70 NC_001798.1 + 19982 0.74 0.095495
Target:  5'- --gCCCCGCCgGacgcggauuccgggUUCUCCCGGCCGGCc -3'
miRNA:   3'- cagGGGGCGGgC--------------AGGGGGGCCGGCCG- -5'
5516 3' -70 NC_001798.1 + 46390 0.74 0.098508
Target:  5'- aUCCCCCGCgCCGUCUggCCGGCagGGCc -3'
miRNA:   3'- cAGGGGGCG-GGCAGGggGGCCGg-CCG- -5'
5516 3' -70 NC_001798.1 + 127650 0.74 0.098508
Target:  5'- gGUCUCCCGCCUcuGUCacgccaaCCCGGCCGcGCg -3'
miRNA:   3'- -CAGGGGGCGGG--CAGgg-----GGGCCGGC-CG- -5'
5516 3' -70 NC_001798.1 + 149147 0.74 0.100886
Target:  5'- cUCCCCCuGCCCccgaggCgCCUCGGCCGGUg -3'
miRNA:   3'- cAGGGGG-CGGGca----GgGGGGCCGGCCG- -5'
5516 3' -70 NC_001798.1 + 54628 0.74 0.102096
Target:  5'- -cCUCCCGCCCcgcaaccccgcgCCCCCCgagcagcGGCCGGCa -3'
miRNA:   3'- caGGGGGCGGGca----------GGGGGG-------CCGGCCG- -5'
5516 3' -70 NC_001798.1 + 27911 0.74 0.103073
Target:  5'- uGUCCCgCCGCCgggGUCCCCgCCGccggggucccggcGCCGGCc -3'
miRNA:   3'- -CAGGG-GGCGGg--CAGGGG-GGC-------------CGGCCG- -5'
5516 3' -70 NC_001798.1 + 75983 0.73 0.10835
Target:  5'- -gCCCgUGCCCG-CCgCCCCGggcGCCGGCg -3'
miRNA:   3'- caGGGgGCGGGCaGG-GGGGC---CGGCCG- -5'
5516 3' -70 NC_001798.1 + 145622 0.73 0.10835
Target:  5'- --aCCCCGCCCcaCCgCCCCGcCCGGCa -3'
miRNA:   3'- cagGGGGCGGGcaGG-GGGGCcGGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.