miRNA display CGI


Results 1 - 20 of 256 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5516 3' -70 NC_001798.1 + 21466 1.08 0.000235
Target:  5'- cGUCCCCCGCCCGUCCCCCCGGCCGGCc -3'
miRNA:   3'- -CAGGGGGCGGGCAGGGGGGCCGGCCG- -5'
5516 3' -70 NC_001798.1 + 21354 0.91 0.005315
Target:  5'- cGUCCCCCcgGCCCGUCCCCCCGGCCcguccccccGGCc -3'
miRNA:   3'- -CAGGGGG--CGGGCAGGGGGGCCGG---------CCG- -5'
5516 3' -70 NC_001798.1 + 21393 0.91 0.005315
Target:  5'- cGUCCCCCcgGCCCGUCCCCCCGGCCcguccccccGGCc -3'
miRNA:   3'- -CAGGGGG--CGGGCAGGGGGGCCGG---------CCG- -5'
5516 3' -70 NC_001798.1 + 21432 0.9 0.006178
Target:  5'- cGUCCCCCcgGCCCGUCCCCCCGGCCcGUc -3'
miRNA:   3'- -CAGGGGG--CGGGCAGGGGGGCCGGcCG- -5'
5516 3' -70 NC_001798.1 + 21084 0.87 0.010456
Target:  5'- cGUCCCCCcgGCCCGUCCCCCCGuccccCCGGCc -3'
miRNA:   3'- -CAGGGGG--CGGGCAGGGGGGCc----GGCCG- -5'
5516 3' -70 NC_001798.1 + 21126 0.87 0.010456
Target:  5'- cGUCCCCCcgGCCCGUCCCCCCGuccccCCGGCc -3'
miRNA:   3'- -CAGGGGG--CGGGCAGGGGGGCc----GGCCG- -5'
5516 3' -70 NC_001798.1 + 21293 0.86 0.011556
Target:  5'- cGUCCCCCcgucccCCCGUCCCCCCGGCCccccGGCc -3'
miRNA:   3'- -CAGGGGGc-----GGGCAGGGGGGCCGG----CCG- -5'
5516 3' -70 NC_001798.1 + 511 0.85 0.015212
Target:  5'- uUCCCCCGCCCcUCCCCCCGcGCCcGCg -3'
miRNA:   3'- cAGGGGGCGGGcAGGGGGGC-CGGcCG- -5'
5516 3' -70 NC_001798.1 + 30431 0.81 0.027646
Target:  5'- -gCCCCCgGCCCGg-CCCCCGGCCGaGCg -3'
miRNA:   3'- caGGGGG-CGGGCagGGGGGCCGGC-CG- -5'
5516 3' -70 NC_001798.1 + 147195 0.8 0.033455
Target:  5'- cGUCCCCCGCCCGgcgguccggcccgggCCCCCGGCgGaGCg -3'
miRNA:   3'- -CAGGGGGCGGGCag-------------GGGGGCCGgC-CG- -5'
5516 3' -70 NC_001798.1 + 145539 0.79 0.041061
Target:  5'- -gCCCCCGCCCGgCCgCCCGcgucgcGCCGGCg -3'
miRNA:   3'- caGGGGGCGGGCaGGgGGGC------CGGCCG- -5'
5516 3' -70 NC_001798.1 + 89392 0.79 0.043028
Target:  5'- cGUCCCCCGgCCGcuccccuUCCCCCCgaGGCaCGGCc -3'
miRNA:   3'- -CAGGGGGCgGGC-------AGGGGGG--CCG-GCCG- -5'
5516 3' -70 NC_001798.1 + 152614 0.78 0.044755
Target:  5'- -cCCCCCGCCgacgcagaugggaGUCCCCCCGGCgccccgcCGGCg -3'
miRNA:   3'- caGGGGGCGGg------------CAGGGGGGCCG-------GCCG- -5'
5516 3' -70 NC_001798.1 + 154454 0.78 0.045308
Target:  5'- cUUCCCCGUCCcUCCCCCgGaGCCGGCc -3'
miRNA:   3'- cAGGGGGCGGGcAGGGGGgC-CGGCCG- -5'
5516 3' -70 NC_001798.1 + 116 0.78 0.045308
Target:  5'- cUUCCCCGUCCcUCCCCCgGaGCCGGCc -3'
miRNA:   3'- cAGGGGGCGGGcAGGGGGgC-CGGCCG- -5'
5516 3' -70 NC_001798.1 + 21168 0.78 0.047589
Target:  5'- cGUCCCCCcgGCCCGUCCCCCCGuCCc-- -3'
miRNA:   3'- -CAGGGGG--CGGGCAGGGGGGCcGGccg -5'
5516 3' -70 NC_001798.1 + 82047 0.78 0.049982
Target:  5'- gGUCCCUCGCcgacacccccCCGgggCCCCgCGGCCGGCc -3'
miRNA:   3'- -CAGGGGGCG----------GGCa--GGGGgGCCGGCCG- -5'
5516 3' -70 NC_001798.1 + 151093 0.78 0.052492
Target:  5'- -aCCCCCGCCCG-CCCCCCGcCCGa- -3'
miRNA:   3'- caGGGGGCGGGCaGGGGGGCcGGCcg -5'
5516 3' -70 NC_001798.1 + 115731 0.77 0.055125
Target:  5'- cUUCCCgGCggcgaaGUCCCCCCGGCCGGUc -3'
miRNA:   3'- cAGGGGgCGgg----CAGGGGGGCCGGCCG- -5'
5516 3' -70 NC_001798.1 + 145413 0.77 0.056489
Target:  5'- -gCCCCCGCCCGgccgccgcgCgCCCCCGcCCGGCc -3'
miRNA:   3'- caGGGGGCGGGCa--------G-GGGGGCcGGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.