miRNA display CGI


Results 21 - 40 of 256 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5516 3' -70 NC_001798.1 + 23073 0.66 0.338781
Target:  5'- aUCCCgUCGCC---CCCCCCGGagcgcgaCGGCg -3'
miRNA:   3'- cAGGG-GGCGGgcaGGGGGGCCg------GCCG- -5'
5516 3' -70 NC_001798.1 + 34418 0.66 0.338781
Target:  5'- cUCUUCCGCCCGcCCCCCCccccucuccccGCCGccucaGCa -3'
miRNA:   3'- cAGGGGGCGGGCaGGGGGGc----------CGGC-----CG- -5'
5516 3' -70 NC_001798.1 + 107447 0.66 0.338781
Target:  5'- -aCCCCgCGcCCCGaCCCCgaGGaCGGCg -3'
miRNA:   3'- caGGGG-GC-GGGCaGGGGggCCgGCCG- -5'
5516 3' -70 NC_001798.1 + 134740 0.66 0.338781
Target:  5'- gGUUCUCCGCCCcggcgcugGUCgCCCUCuuCCGGCa -3'
miRNA:   3'- -CAGGGGGCGGG--------CAG-GGGGGccGGCCG- -5'
5516 3' -70 NC_001798.1 + 76914 0.66 0.338781
Target:  5'- -aCCUggccgaugCCGUCCGgggcccCCCCCCGGaagucaCGGCg -3'
miRNA:   3'- caGGG--------GGCGGGCa-----GGGGGGCCg-----GCCG- -5'
5516 3' -70 NC_001798.1 + 125354 0.66 0.338781
Target:  5'- -gCCCCCaaaGUCaCG-CCCCCUGaguugcGCCGGCa -3'
miRNA:   3'- caGGGGG---CGG-GCaGGGGGGC------CGGCCG- -5'
5516 3' -70 NC_001798.1 + 134217 0.66 0.338781
Target:  5'- -gCCCCUGggggaCCCGaCCCUgUGGCgGGCg -3'
miRNA:   3'- caGGGGGC-----GGGCaGGGGgGCCGgCCG- -5'
5516 3' -70 NC_001798.1 + 134142 0.66 0.331952
Target:  5'- cUCCCCCGa-CGUCucggCCCCCggGGCCGucGCg -3'
miRNA:   3'- cAGGGGGCggGCAG----GGGGG--CCGGC--CG- -5'
5516 3' -70 NC_001798.1 + 128232 0.66 0.331952
Target:  5'- cUCCCUCGUCgUGUCgCUggaggCGGCCGGCa -3'
miRNA:   3'- cAGGGGGCGG-GCAGgGGg----GCCGGCCG- -5'
5516 3' -70 NC_001798.1 + 31183 0.66 0.331952
Target:  5'- -cCUCCCaGCCCG-CCgcgaCCCGaCCGGCg -3'
miRNA:   3'- caGGGGG-CGGGCaGGg---GGGCcGGCCG- -5'
5516 3' -70 NC_001798.1 + 79979 0.66 0.331952
Target:  5'- cGUCCgCCGCCgGgCCCCCgGGggucCCaGCg -3'
miRNA:   3'- -CAGGgGGCGGgCaGGGGGgCC----GGcCG- -5'
5516 3' -70 NC_001798.1 + 74145 0.66 0.331952
Target:  5'- cGUUCUUCGCCgG-CCCCUgGGCCaugcGGCc -3'
miRNA:   3'- -CAGGGGGCGGgCaGGGGGgCCGG----CCG- -5'
5516 3' -70 NC_001798.1 + 3163 0.66 0.327903
Target:  5'- -aCCgCCgGCgCCGUCgucgUcgucgucgucgucggCCCCGGCCGGCg -3'
miRNA:   3'- caGG-GGgCG-GGCAG----G---------------GGGGCCGGCCG- -5'
5516 3' -70 NC_001798.1 + 83845 0.66 0.325892
Target:  5'- -gUCCCCGUCCGggcggcgcuggcgggCccgaggcggcgaCCCCCGGCCcgGGCg -3'
miRNA:   3'- caGGGGGCGGGCa--------------G------------GGGGGCCGG--CCG- -5'
5516 3' -70 NC_001798.1 + 71073 0.66 0.325224
Target:  5'- -aCCgCCCuaaGCCgCGUCagCCCgCGGUCGGCg -3'
miRNA:   3'- caGG-GGG---CGG-GCAGg-GGG-GCCGGCCG- -5'
5516 3' -70 NC_001798.1 + 132169 0.66 0.325224
Target:  5'- -gCCCCC-CCCGgacgcCCCCCCGGaCGcCa -3'
miRNA:   3'- caGGGGGcGGGCa----GGGGGGCCgGCcG- -5'
5516 3' -70 NC_001798.1 + 147413 0.66 0.325224
Target:  5'- uUCCCCC-CCCc-CCCCCCGccGCCGccGCc -3'
miRNA:   3'- cAGGGGGcGGGcaGGGGGGC--CGGC--CG- -5'
5516 3' -70 NC_001798.1 + 48408 0.66 0.324556
Target:  5'- -gCCCCCGCCCGcucggcuUCCCguCCCcGCCGc- -3'
miRNA:   3'- caGGGGGCGGGC-------AGGG--GGGcCGGCcg -5'
5516 3' -70 NC_001798.1 + 55067 0.67 0.321235
Target:  5'- aUCCCCUguacgacuggggcggGUCUGcccucuucUCCCCUCGGCgGGCc -3'
miRNA:   3'- cAGGGGG---------------CGGGC--------AGGGGGGCCGgCCG- -5'
5516 3' -70 NC_001798.1 + 127781 0.67 0.318597
Target:  5'- --aCCCCGCCCGcgaccccgauagUCCCCCgaagCGGCCc-- -3'
miRNA:   3'- cagGGGGCGGGC------------AGGGGG----GCCGGccg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.