miRNA display CGI


Results 21 - 40 of 256 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5516 3' -70 NC_001798.1 + 3981 0.68 0.275061
Target:  5'- cGUCCagcucgaCCGCCgGggCCgCCCGGCCGugaaGCg -3'
miRNA:   3'- -CAGGg------GGCGGgCa-GGgGGGCCGGC----CG- -5'
5516 3' -70 NC_001798.1 + 4942 0.73 0.113611
Target:  5'- cGUCCCCCGuCCuCGUCCgccaucgcgaCCUCGGCCccgcGGCc -3'
miRNA:   3'- -CAGGGGGC-GG-GCAGG----------GGGGCCGG----CCG- -5'
5516 3' -70 NC_001798.1 + 5570 0.76 0.06864
Target:  5'- -gCCCCCGCCgG-CCCCaaaggGGCCGGCg -3'
miRNA:   3'- caGGGGGCGGgCaGGGGgg---CCGGCCG- -5'
5516 3' -70 NC_001798.1 + 7055 0.69 0.235899
Target:  5'- uUCCCCgGCCCa--CCCCCaaaccccgguuggGGCgGGCa -3'
miRNA:   3'- cAGGGGgCGGGcagGGGGG-------------CCGgCCG- -5'
5516 3' -70 NC_001798.1 + 13970 0.69 0.236417
Target:  5'- uUCCCCCcCCCcccCCCCCCaGuuGGUa -3'
miRNA:   3'- cAGGGGGcGGGca-GGGGGGcCggCCG- -5'
5516 3' -70 NC_001798.1 + 19360 0.69 0.221298
Target:  5'- --aCCCCGCCCcgcaucaUCCCgCCCGcauCCGGCg -3'
miRNA:   3'- cagGGGGCGGGc------AGGG-GGGCc--GGCCG- -5'
5516 3' -70 NC_001798.1 + 19479 0.67 0.280977
Target:  5'- -aCCCCCagaacCCCGggcCCCCgCUGGCCguuGGCg -3'
miRNA:   3'- caGGGGGc----GGGCa--GGGG-GGCCGG---CCG- -5'
5516 3' -70 NC_001798.1 + 19982 0.74 0.095495
Target:  5'- --gCCCCGCCgGacgcggauuccgggUUCUCCCGGCCGGCc -3'
miRNA:   3'- cagGGGGCGGgC--------------AGGGGGGCCGGCCG- -5'
5516 3' -70 NC_001798.1 + 20703 0.67 0.286994
Target:  5'- uUCCCuCCGauuCCGUCCCCgUGGUCGa- -3'
miRNA:   3'- cAGGG-GGCg--GGCAGGGGgGCCGGCcg -5'
5516 3' -70 NC_001798.1 + 21084 0.87 0.010456
Target:  5'- cGUCCCCCcgGCCCGUCCCCCCGuccccCCGGCc -3'
miRNA:   3'- -CAGGGGG--CGGGCAGGGGGGCc----GGCCG- -5'
5516 3' -70 NC_001798.1 + 21126 0.87 0.010456
Target:  5'- cGUCCCCCcgGCCCGUCCCCCCGuccccCCGGCc -3'
miRNA:   3'- -CAGGGGG--CGGGCAGGGGGGCc----GGCCG- -5'
5516 3' -70 NC_001798.1 + 21168 0.78 0.047589
Target:  5'- cGUCCCCCcgGCCCGUCCCCCCGuCCc-- -3'
miRNA:   3'- -CAGGGGG--CGGGCAGGGGGGCcGGccg -5'
5516 3' -70 NC_001798.1 + 21197 0.72 0.133956
Target:  5'- cGUCCCCCcgucccCCCGUCCCCCCGuCCc-- -3'
miRNA:   3'- -CAGGGGGc-----GGGCAGGGGGGCcGGccg -5'
5516 3' -70 NC_001798.1 + 21229 0.72 0.133956
Target:  5'- cGUCCCCCcgucccCCCGUCCCCCCGuCCc-- -3'
miRNA:   3'- -CAGGGGGc-----GGGCAGGGGGGCcGGccg -5'
5516 3' -70 NC_001798.1 + 21261 0.72 0.133956
Target:  5'- cGUCCCCCcgucccCCCGUCCCCCCGuCCc-- -3'
miRNA:   3'- -CAGGGGGc-----GGGCAGGGGGGCcGGccg -5'
5516 3' -70 NC_001798.1 + 21293 0.86 0.011556
Target:  5'- cGUCCCCCcgucccCCCGUCCCCCCGGCCccccGGCc -3'
miRNA:   3'- -CAGGGGGc-----GGGCAGGGGGGCCGG----CCG- -5'
5516 3' -70 NC_001798.1 + 21328 0.73 0.12195
Target:  5'- -cCCCCCGgcccCCCGgCCCCCCGGCCn-- -3'
miRNA:   3'- caGGGGGC----GGGCaGGGGGGCCGGccg -5'
5516 3' -70 NC_001798.1 + 21354 0.91 0.005315
Target:  5'- cGUCCCCCcgGCCCGUCCCCCCGGCCcguccccccGGCc -3'
miRNA:   3'- -CAGGGGG--CGGGCAGGGGGGCCGG---------CCG- -5'
5516 3' -70 NC_001798.1 + 21393 0.91 0.005315
Target:  5'- cGUCCCCCcgGCCCGUCCCCCCGGCCcguccccccGGCc -3'
miRNA:   3'- -CAGGGGG--CGGGCAGGGGGGCCGG---------CCG- -5'
5516 3' -70 NC_001798.1 + 21432 0.9 0.006178
Target:  5'- cGUCCCCCcgGCCCGUCCCCCCGGCCcGUc -3'
miRNA:   3'- -CAGGGGG--CGGGCAGGGGGGCCGGcCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.