miRNA display CGI


Results 21 - 32 of 32 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5516 5' -53.4 NC_001798.1 + 139016 0.68 0.905122
Target:  5'- aUCGCCcucccgggcguuccgGUACCUGCGAaccagccGCUGCGGc -3'
miRNA:   3'- -AGUGG---------------CAUGGACGCUauuc---CGACGUC- -5'
5516 5' -53.4 NC_001798.1 + 26276 0.68 0.908273
Target:  5'- gCACCGcGCCUGCGcgcgcUGGGGCcugggcgcgccgcUGCGGc -3'
miRNA:   3'- aGUGGCaUGGACGCu----AUUCCG-------------ACGUC- -5'
5516 5' -53.4 NC_001798.1 + 76130 0.68 0.908896
Target:  5'- -aGCCGUAUacaGCGcgAAGGCccUGCAGg -3'
miRNA:   3'- agUGGCAUGga-CGCuaUUCCG--ACGUC- -5'
5516 5' -53.4 NC_001798.1 + 76960 0.68 0.914989
Target:  5'- gCugCGggcggACCUGUGG--GGGCUGCuGg -3'
miRNA:   3'- aGugGCa----UGGACGCUauUCCGACGuC- -5'
5516 5' -53.4 NC_001798.1 + 106954 0.67 0.934855
Target:  5'- gCACCGUcuggACCgcgGCGAgauaucggccgggGAGGCgGCGGu -3'
miRNA:   3'- aGUGGCA----UGGa--CGCUa------------UUCCGaCGUC- -5'
5516 5' -53.4 NC_001798.1 + 69473 0.67 0.936862
Target:  5'- gCACCGgGCCgucgcgGCGAgcgauGGGCgggcGCAGg -3'
miRNA:   3'- aGUGGCaUGGa-----CGCUau---UCCGa---CGUC- -5'
5516 5' -53.4 NC_001798.1 + 106116 0.67 0.936862
Target:  5'- cCGCCGggUCUGCGGUuccGGCgGCAc -3'
miRNA:   3'- aGUGGCauGGACGCUAuu-CCGaCGUc -5'
5516 5' -53.4 NC_001798.1 + 19042 0.67 0.950652
Target:  5'- cCACCGgcuauaccACCUGUGGguggucGGGGCgGCGGa -3'
miRNA:   3'- aGUGGCa-------UGGACGCUa-----UUCCGaCGUC- -5'
5516 5' -53.4 NC_001798.1 + 36129 0.66 0.958631
Target:  5'- cUCGCCGcgauCCcGcCGGUGGGGCgcgGCGGc -3'
miRNA:   3'- -AGUGGCau--GGaC-GCUAUUCCGa--CGUC- -5'
5516 5' -53.4 NC_001798.1 + 135454 0.66 0.962268
Target:  5'- gCACCGgGgCUGCGuucugGGGGCUGUu- -3'
miRNA:   3'- aGUGGCaUgGACGCua---UUCCGACGuc -5'
5516 5' -53.4 NC_001798.1 + 106651 0.66 0.96434
Target:  5'- aCGCCGgccaacagcacgcGCCUGCGuucggucAGGCUGCu- -3'
miRNA:   3'- aGUGGCa------------UGGACGCuau----UCCGACGuc -5'
5516 5' -53.4 NC_001798.1 + 37862 0.66 0.96917
Target:  5'- -gGCCGUGCCgcuugagcuuauagaGCGAagguguugUAGGGCcGCGGa -3'
miRNA:   3'- agUGGCAUGGa--------------CGCU--------AUUCCGaCGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.