miRNA display CGI


Results 21 - 32 of 32 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5516 5' -53.4 NC_001798.1 + 96348 0.68 0.895972
Target:  5'- gCugCGgcggcACCUGCGGccGGGGCUGgAGg -3'
miRNA:   3'- aGugGCa----UGGACGCUa-UUCCGACgUC- -5'
5516 5' -53.4 NC_001798.1 + 96540 0.69 0.859521
Target:  5'- cUguCCGUACCaccaGCaGAUccGGCUGCAGa -3'
miRNA:   3'- -AguGGCAUGGa---CG-CUAuuCCGACGUC- -5'
5516 5' -53.4 NC_001798.1 + 105413 0.69 0.859521
Target:  5'- cCGCCGcgGCC-GCGGUGcgcuGGGcCUGCAGc -3'
miRNA:   3'- aGUGGCa-UGGaCGCUAU----UCC-GACGUC- -5'
5516 5' -53.4 NC_001798.1 + 106116 0.67 0.936862
Target:  5'- cCGCCGggUCUGCGGUuccGGCgGCAc -3'
miRNA:   3'- aGUGGCauGGACGCUAuu-CCGaCGUc -5'
5516 5' -53.4 NC_001798.1 + 106651 0.66 0.96434
Target:  5'- aCGCCGgccaacagcacgcGCCUGCGuucggucAGGCUGCu- -3'
miRNA:   3'- aGUGGCa------------UGGACGCuau----UCCGACGuc -5'
5516 5' -53.4 NC_001798.1 + 106954 0.67 0.934855
Target:  5'- gCACCGUcuggACCgcgGCGAgauaucggccgggGAGGCgGCGGu -3'
miRNA:   3'- aGUGGCA----UGGa--CGCUa------------UUCCGaCGUC- -5'
5516 5' -53.4 NC_001798.1 + 110208 0.74 0.607776
Target:  5'- cUCACCGccACCUGCGA-AGGGCacgcGCGGg -3'
miRNA:   3'- -AGUGGCa-UGGACGCUaUUCCGa---CGUC- -5'
5516 5' -53.4 NC_001798.1 + 112542 0.7 0.817714
Target:  5'- cUCGCgCGUGCCgcccGCGcGUAGGGUUGUGGc -3'
miRNA:   3'- -AGUG-GCAUGGa---CGC-UAUUCCGACGUC- -5'
5516 5' -53.4 NC_001798.1 + 113969 0.69 0.889146
Target:  5'- gUCG-CGUccGCCgGCGGUGAGGCguugUGCGGg -3'
miRNA:   3'- -AGUgGCA--UGGaCGCUAUUCCG----ACGUC- -5'
5516 5' -53.4 NC_001798.1 + 128429 0.71 0.799697
Target:  5'- cCGCCuccACgCUGCGGUGGGGCgcGCAGg -3'
miRNA:   3'- aGUGGca-UG-GACGCUAUUCCGa-CGUC- -5'
5516 5' -53.4 NC_001798.1 + 135454 0.66 0.962268
Target:  5'- gCACCGgGgCUGCGuucugGGGGCUGUu- -3'
miRNA:   3'- aGUGGCaUgGACGCua---UUCCGACGuc -5'
5516 5' -53.4 NC_001798.1 + 139016 0.68 0.905122
Target:  5'- aUCGCCcucccgggcguuccgGUACCUGCGAaccagccGCUGCGGc -3'
miRNA:   3'- -AGUGG---------------CAUGGACGCUauuc---CGACGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.