miRNA display CGI


Results 21 - 32 of 32 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5516 5' -53.4 NC_001798.1 + 69473 0.67 0.936862
Target:  5'- gCACCGgGCCgucgcgGCGAgcgauGGGCgggcGCAGg -3'
miRNA:   3'- aGUGGCaUGGa-----CGCUau---UCCGa---CGUC- -5'
5516 5' -53.4 NC_001798.1 + 68367 0.69 0.889146
Target:  5'- -uGCagGUGCgUGCGGUAGGGCgcccccGCAGa -3'
miRNA:   3'- agUGg-CAUGgACGCUAUUCCGa-----CGUC- -5'
5516 5' -53.4 NC_001798.1 + 62053 0.69 0.882084
Target:  5'- aUACCGaucuCCUGCuGAU-GGGCUGCGa -3'
miRNA:   3'- aGUGGCau--GGACG-CUAuUCCGACGUc -5'
5516 5' -53.4 NC_001798.1 + 52532 0.73 0.691315
Target:  5'- gCGCCGUGCUgGCGAcGGGGCucauccUGCAGc -3'
miRNA:   3'- aGUGGCAUGGaCGCUaUUCCG------ACGUC- -5'
5516 5' -53.4 NC_001798.1 + 37862 0.66 0.96917
Target:  5'- -gGCCGUGCCgcuugagcuuauagaGCGAagguguugUAGGGCcGCGGa -3'
miRNA:   3'- agUGGCAUGGa--------------CGCU--------AUUCCGaCGUC- -5'
5516 5' -53.4 NC_001798.1 + 36129 0.66 0.958631
Target:  5'- cUCGCCGcgauCCcGcCGGUGGGGCgcgGCGGc -3'
miRNA:   3'- -AGUGGCau--GGaC-GCUAUUCCGa--CGUC- -5'
5516 5' -53.4 NC_001798.1 + 36056 0.7 0.826462
Target:  5'- gUCGgCGUG-CUGCcg-GAGGCUGCGGg -3'
miRNA:   3'- -AGUgGCAUgGACGcuaUUCCGACGUC- -5'
5516 5' -53.4 NC_001798.1 + 26276 0.68 0.908273
Target:  5'- gCACCGcGCCUGCGcgcgcUGGGGCcugggcgcgccgcUGCGGc -3'
miRNA:   3'- aGUGGCaUGGACGCu----AUUCCG-------------ACGUC- -5'
5516 5' -53.4 NC_001798.1 + 25572 0.7 0.843394
Target:  5'- cUCGCCGcUGCCggGCGAggaccuGGCcGCGGg -3'
miRNA:   3'- -AGUGGC-AUGGa-CGCUauu---CCGaCGUC- -5'
5516 5' -53.4 NC_001798.1 + 24755 0.69 0.882084
Target:  5'- gCGCCccGCCUGCGcgccuGGCUGCGc -3'
miRNA:   3'- aGUGGcaUGGACGCuauu-CCGACGUc -5'
5516 5' -53.4 NC_001798.1 + 21500 1.09 0.004671
Target:  5'- gUCACCGUACCUGCGAUAAGGCUGCAGu -3'
miRNA:   3'- -AGUGGCAUGGACGCUAUUCCGACGUC- -5'
5516 5' -53.4 NC_001798.1 + 19042 0.67 0.950652
Target:  5'- cCACCGgcuauaccACCUGUGGguggucGGGGCgGCGGa -3'
miRNA:   3'- aGUGGCa-------UGGACGCUa-----UUCCGaCGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.