miRNA display CGI


Results 1 - 20 of 32 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5516 5' -53.4 NC_001798.1 + 139016 0.68 0.905122
Target:  5'- aUCGCCcucccgggcguuccgGUACCUGCGAaccagccGCUGCGGc -3'
miRNA:   3'- -AGUGG---------------CAUGGACGCUauuc---CGACGUC- -5'
5516 5' -53.4 NC_001798.1 + 135454 0.66 0.962268
Target:  5'- gCACCGgGgCUGCGuucugGGGGCUGUu- -3'
miRNA:   3'- aGUGGCaUgGACGCua---UUCCGACGuc -5'
5516 5' -53.4 NC_001798.1 + 128429 0.71 0.799697
Target:  5'- cCGCCuccACgCUGCGGUGGGGCgcGCAGg -3'
miRNA:   3'- aGUGGca-UG-GACGCUAUUCCGa-CGUC- -5'
5516 5' -53.4 NC_001798.1 + 113969 0.69 0.889146
Target:  5'- gUCG-CGUccGCCgGCGGUGAGGCguugUGCGGg -3'
miRNA:   3'- -AGUgGCA--UGGaCGCUAUUCCG----ACGUC- -5'
5516 5' -53.4 NC_001798.1 + 112542 0.7 0.817714
Target:  5'- cUCGCgCGUGCCgcccGCGcGUAGGGUUGUGGc -3'
miRNA:   3'- -AGUG-GCAUGGa---CGC-UAUUCCGACGUC- -5'
5516 5' -53.4 NC_001798.1 + 110208 0.74 0.607776
Target:  5'- cUCACCGccACCUGCGA-AGGGCacgcGCGGg -3'
miRNA:   3'- -AGUGGCa-UGGACGCUaUUCCGa---CGUC- -5'
5516 5' -53.4 NC_001798.1 + 106954 0.67 0.934855
Target:  5'- gCACCGUcuggACCgcgGCGAgauaucggccgggGAGGCgGCGGu -3'
miRNA:   3'- aGUGGCA----UGGa--CGCUa------------UUCCGaCGUC- -5'
5516 5' -53.4 NC_001798.1 + 106651 0.66 0.96434
Target:  5'- aCGCCGgccaacagcacgcGCCUGCGuucggucAGGCUGCu- -3'
miRNA:   3'- aGUGGCa------------UGGACGCuau----UCCGACGuc -5'
5516 5' -53.4 NC_001798.1 + 106116 0.67 0.936862
Target:  5'- cCGCCGggUCUGCGGUuccGGCgGCAc -3'
miRNA:   3'- aGUGGCauGGACGCUAuu-CCGaCGUc -5'
5516 5' -53.4 NC_001798.1 + 105413 0.69 0.859521
Target:  5'- cCGCCGcgGCC-GCGGUGcgcuGGGcCUGCAGc -3'
miRNA:   3'- aGUGGCa-UGGaCGCUAU----UCC-GACGUC- -5'
5516 5' -53.4 NC_001798.1 + 96540 0.69 0.859521
Target:  5'- cUguCCGUACCaccaGCaGAUccGGCUGCAGa -3'
miRNA:   3'- -AguGGCAUGGa---CG-CUAuuCCGACGUC- -5'
5516 5' -53.4 NC_001798.1 + 96348 0.68 0.895972
Target:  5'- gCugCGgcggcACCUGCGGccGGGGCUGgAGg -3'
miRNA:   3'- aGugGCa----UGGACGCUa-UUCCGACgUC- -5'
5516 5' -53.4 NC_001798.1 + 93724 0.69 0.887052
Target:  5'- cCGCCacGCCUGCgcgcacacgacgcuGAUGcGGCUGCGGg -3'
miRNA:   3'- aGUGGcaUGGACG--------------CUAUuCCGACGUC- -5'
5516 5' -53.4 NC_001798.1 + 84712 0.75 0.583794
Target:  5'- cUCGCCGUGcacgcacgcgguguCCUGCGuauGUGGGGCgGCGGg -3'
miRNA:   3'- -AGUGGCAU--------------GGACGC---UAUUCCGaCGUC- -5'
5516 5' -53.4 NC_001798.1 + 83353 0.69 0.874788
Target:  5'- gCGgCGUcGCCcGCGAacauAGGCUGCGGg -3'
miRNA:   3'- aGUgGCA-UGGaCGCUau--UCCGACGUC- -5'
5516 5' -53.4 NC_001798.1 + 79177 0.69 0.867266
Target:  5'- aCACCGc-CCUGUGcgcccGGCUGCGGg -3'
miRNA:   3'- aGUGGCauGGACGCuauu-CCGACGUC- -5'
5516 5' -53.4 NC_001798.1 + 76960 0.68 0.914989
Target:  5'- gCugCGggcggACCUGUGG--GGGCUGCuGg -3'
miRNA:   3'- aGugGCa----UGGACGCUauUCCGACGuC- -5'
5516 5' -53.4 NC_001798.1 + 76130 0.68 0.908896
Target:  5'- -aGCCGUAUacaGCGcgAAGGCccUGCAGg -3'
miRNA:   3'- agUGGCAUGga-CGCuaUUCCG--ACGUC- -5'
5516 5' -53.4 NC_001798.1 + 75351 0.72 0.711868
Target:  5'- gUCGCCGUACCcgGCGcacccGGGGCUGUu- -3'
miRNA:   3'- -AGUGGCAUGGa-CGCua---UUCCGACGuc -5'
5516 5' -53.4 NC_001798.1 + 74845 0.7 0.826462
Target:  5'- -aGCCGagACCUGCGGguccugGAGGUggggGCAGu -3'
miRNA:   3'- agUGGCa-UGGACGCUa-----UUCCGa---CGUC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.