Results 1 - 20 of 32 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5516 | 5' | -53.4 | NC_001798.1 | + | 19042 | 0.67 | 0.950652 |
Target: 5'- cCACCGgcuauaccACCUGUGGguggucGGGGCgGCGGa -3' miRNA: 3'- aGUGGCa-------UGGACGCUa-----UUCCGaCGUC- -5' |
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5516 | 5' | -53.4 | NC_001798.1 | + | 21500 | 1.09 | 0.004671 |
Target: 5'- gUCACCGUACCUGCGAUAAGGCUGCAGu -3' miRNA: 3'- -AGUGGCAUGGACGCUAUUCCGACGUC- -5' |
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5516 | 5' | -53.4 | NC_001798.1 | + | 24755 | 0.69 | 0.882084 |
Target: 5'- gCGCCccGCCUGCGcgccuGGCUGCGc -3' miRNA: 3'- aGUGGcaUGGACGCuauu-CCGACGUc -5' |
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5516 | 5' | -53.4 | NC_001798.1 | + | 25572 | 0.7 | 0.843394 |
Target: 5'- cUCGCCGcUGCCggGCGAggaccuGGCcGCGGg -3' miRNA: 3'- -AGUGGC-AUGGa-CGCUauu---CCGaCGUC- -5' |
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5516 | 5' | -53.4 | NC_001798.1 | + | 26276 | 0.68 | 0.908273 |
Target: 5'- gCACCGcGCCUGCGcgcgcUGGGGCcugggcgcgccgcUGCGGc -3' miRNA: 3'- aGUGGCaUGGACGCu----AUUCCG-------------ACGUC- -5' |
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5516 | 5' | -53.4 | NC_001798.1 | + | 36056 | 0.7 | 0.826462 |
Target: 5'- gUCGgCGUG-CUGCcg-GAGGCUGCGGg -3' miRNA: 3'- -AGUgGCAUgGACGcuaUUCCGACGUC- -5' |
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5516 | 5' | -53.4 | NC_001798.1 | + | 36129 | 0.66 | 0.958631 |
Target: 5'- cUCGCCGcgauCCcGcCGGUGGGGCgcgGCGGc -3' miRNA: 3'- -AGUGGCau--GGaC-GCUAUUCCGa--CGUC- -5' |
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5516 | 5' | -53.4 | NC_001798.1 | + | 37862 | 0.66 | 0.96917 |
Target: 5'- -gGCCGUGCCgcuugagcuuauagaGCGAagguguugUAGGGCcGCGGa -3' miRNA: 3'- agUGGCAUGGa--------------CGCU--------AUUCCGaCGUC- -5' |
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5516 | 5' | -53.4 | NC_001798.1 | + | 52532 | 0.73 | 0.691315 |
Target: 5'- gCGCCGUGCUgGCGAcGGGGCucauccUGCAGc -3' miRNA: 3'- aGUGGCAUGGaCGCUaUUCCG------ACGUC- -5' |
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5516 | 5' | -53.4 | NC_001798.1 | + | 62053 | 0.69 | 0.882084 |
Target: 5'- aUACCGaucuCCUGCuGAU-GGGCUGCGa -3' miRNA: 3'- aGUGGCau--GGACG-CUAuUCCGACGUc -5' |
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5516 | 5' | -53.4 | NC_001798.1 | + | 68367 | 0.69 | 0.889146 |
Target: 5'- -uGCagGUGCgUGCGGUAGGGCgcccccGCAGa -3' miRNA: 3'- agUGg-CAUGgACGCUAUUCCGa-----CGUC- -5' |
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5516 | 5' | -53.4 | NC_001798.1 | + | 69473 | 0.67 | 0.936862 |
Target: 5'- gCACCGgGCCgucgcgGCGAgcgauGGGCgggcGCAGg -3' miRNA: 3'- aGUGGCaUGGa-----CGCUau---UCCGa---CGUC- -5' |
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5516 | 5' | -53.4 | NC_001798.1 | + | 74845 | 0.7 | 0.826462 |
Target: 5'- -aGCCGagACCUGCGGguccugGAGGUggggGCAGu -3' miRNA: 3'- agUGGCa-UGGACGCUa-----UUCCGa---CGUC- -5' |
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5516 | 5' | -53.4 | NC_001798.1 | + | 75351 | 0.72 | 0.711868 |
Target: 5'- gUCGCCGUACCcgGCGcacccGGGGCUGUu- -3' miRNA: 3'- -AGUGGCAUGGa-CGCua---UUCCGACGuc -5' |
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5516 | 5' | -53.4 | NC_001798.1 | + | 76130 | 0.68 | 0.908896 |
Target: 5'- -aGCCGUAUacaGCGcgAAGGCccUGCAGg -3' miRNA: 3'- agUGGCAUGga-CGCuaUUCCG--ACGUC- -5' |
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5516 | 5' | -53.4 | NC_001798.1 | + | 76960 | 0.68 | 0.914989 |
Target: 5'- gCugCGggcggACCUGUGG--GGGCUGCuGg -3' miRNA: 3'- aGugGCa----UGGACGCUauUCCGACGuC- -5' |
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5516 | 5' | -53.4 | NC_001798.1 | + | 79177 | 0.69 | 0.867266 |
Target: 5'- aCACCGc-CCUGUGcgcccGGCUGCGGg -3' miRNA: 3'- aGUGGCauGGACGCuauu-CCGACGUC- -5' |
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5516 | 5' | -53.4 | NC_001798.1 | + | 83353 | 0.69 | 0.874788 |
Target: 5'- gCGgCGUcGCCcGCGAacauAGGCUGCGGg -3' miRNA: 3'- aGUgGCA-UGGaCGCUau--UCCGACGUC- -5' |
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5516 | 5' | -53.4 | NC_001798.1 | + | 84712 | 0.75 | 0.583794 |
Target: 5'- cUCGCCGUGcacgcacgcgguguCCUGCGuauGUGGGGCgGCGGg -3' miRNA: 3'- -AGUGGCAU--------------GGACGC---UAUUCCGaCGUC- -5' |
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5516 | 5' | -53.4 | NC_001798.1 | + | 93724 | 0.69 | 0.887052 |
Target: 5'- cCGCCacGCCUGCgcgcacacgacgcuGAUGcGGCUGCGGg -3' miRNA: 3'- aGUGGcaUGGACG--------------CUAUuCCGACGUC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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