Results 21 - 40 of 49 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5517 | 3' | -55.4 | NC_001798.1 | + | 23549 | 0.67 | 0.861241 |
Target: 5'- -cGAGGAGgCGGggGUGCCCGCGa--- -3' miRNA: 3'- uuUUCCUUgGCUa-CGCGGGCGCagag -5' |
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5517 | 3' | -55.4 | NC_001798.1 | + | 123409 | 0.67 | 0.861241 |
Target: 5'- --cGGGAGCCGcgGC-CCCGCcggGUCa- -3' miRNA: 3'- uuuUCCUUGGCuaCGcGGGCG---CAGag -5' |
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5517 | 3' | -55.4 | NC_001798.1 | + | 57542 | 0.67 | 0.868866 |
Target: 5'- -cGGGGGGCgGAUGCGuUCCGCGg--- -3' miRNA: 3'- uuUUCCUUGgCUACGC-GGGCGCagag -5' |
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5517 | 3' | -55.4 | NC_001798.1 | + | 7572 | 0.67 | 0.876273 |
Target: 5'- --cGGGAuCCauaacGCGCCCGCGUC-Cg -3' miRNA: 3'- uuuUCCUuGGcua--CGCGGGCGCAGaG- -5' |
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5517 | 3' | -55.4 | NC_001798.1 | + | 10325 | 0.67 | 0.876273 |
Target: 5'- gGGGGGGAacgcugACCGGcgUGCguucgucacGCCCGCGUCg- -3' miRNA: 3'- -UUUUCCU------UGGCU--ACG---------CGGGCGCAGag -5' |
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5517 | 3' | -55.4 | NC_001798.1 | + | 74739 | 0.67 | 0.883455 |
Target: 5'- uGGAGGGGACCc---CGCCCGCGaagccCUCg -3' miRNA: 3'- -UUUUCCUUGGcuacGCGGGCGCa----GAG- -5' |
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5517 | 3' | -55.4 | NC_001798.1 | + | 3603 | 0.68 | 0.811268 |
Target: 5'- uGAAGGAGCUGcuguUGCGCgCCGCGcC-Cg -3' miRNA: 3'- uUUUCCUUGGCu---ACGCG-GGCGCaGaG- -5' |
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5517 | 3' | -55.4 | NC_001798.1 | + | 32242 | 0.68 | 0.820062 |
Target: 5'- ---cGGGGCUGGUgggagcgucGCGUCCGCGUC-Cg -3' miRNA: 3'- uuuuCCUUGGCUA---------CGCGGGCGCAGaG- -5' |
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5517 | 3' | -55.4 | NC_001798.1 | + | 103003 | 0.68 | 0.820062 |
Target: 5'- --cGGGGGCCcaGGUGCGCCCggccaGCGcgagCUCg -3' miRNA: 3'- uuuUCCUUGG--CUACGCGGG-----CGCa---GAG- -5' |
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5517 | 3' | -55.4 | NC_001798.1 | + | 22203 | 0.68 | 0.827827 |
Target: 5'- -cAGGGGAgCGAgccCGCCCGCGacgagggUCUCa -3' miRNA: 3'- uuUUCCUUgGCUac-GCGGGCGC-------AGAG- -5' |
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5517 | 3' | -55.4 | NC_001798.1 | + | 149979 | 0.68 | 0.828681 |
Target: 5'- ---cGGGGgCGcgGCGCCCGCGg--- -3' miRNA: 3'- uuuuCCUUgGCuaCGCGGGCGCagag -5' |
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5517 | 3' | -55.4 | NC_001798.1 | + | 87996 | 0.68 | 0.837116 |
Target: 5'- -cGGGGggUCGGcaUGCGaCgGCGUCUCc -3' miRNA: 3'- uuUUCCuuGGCU--ACGCgGgCGCAGAG- -5' |
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5517 | 3' | -55.4 | NC_001798.1 | + | 151614 | 0.68 | 0.837116 |
Target: 5'- --cGGGGGCCGGgccggggGCGUggCCGCGUCcaUCa -3' miRNA: 3'- uuuUCCUUGGCUa------CGCG--GGCGCAG--AG- -5' |
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5517 | 3' | -55.4 | NC_001798.1 | + | 121569 | 0.68 | 0.845359 |
Target: 5'- --uGGGcGACC--UGUGCCCGCGUgCUCc -3' miRNA: 3'- uuuUCC-UUGGcuACGCGGGCGCA-GAG- -5' |
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5517 | 3' | -55.4 | NC_001798.1 | + | 85294 | 0.68 | 0.845359 |
Target: 5'- --cGGGGGCCGGggucCGCCCGCGg--- -3' miRNA: 3'- uuuUCCUUGGCUac--GCGGGCGCagag -5' |
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5517 | 3' | -55.4 | NC_001798.1 | + | 84791 | 0.69 | 0.764966 |
Target: 5'- aGGAGGGAggccaGCCGcUGCGUCCGCGa--- -3' miRNA: 3'- -UUUUCCU-----UGGCuACGCGGGCGCagag -5' |
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5517 | 3' | -55.4 | NC_001798.1 | + | 137616 | 0.69 | 0.773559 |
Target: 5'- ---cGGAGCCGGUgaugagcGCGCCCGC-UCg- -3' miRNA: 3'- uuuuCCUUGGCUA-------CGCGGGCGcAGag -5' |
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5517 | 3' | -55.4 | NC_001798.1 | + | 24807 | 0.69 | 0.793186 |
Target: 5'- ---uGGuGCUGAUGCGCCUGCG-Cg- -3' miRNA: 3'- uuuuCCuUGGCUACGCGGGCGCaGag -5' |
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5517 | 3' | -55.4 | NC_001798.1 | + | 1251 | 0.7 | 0.745531 |
Target: 5'- --cGGGGGCgGGcccGCGUCCGCGUCgUCg -3' miRNA: 3'- uuuUCCUUGgCUa--CGCGGGCGCAG-AG- -5' |
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5517 | 3' | -55.4 | NC_001798.1 | + | 56533 | 0.7 | 0.70551 |
Target: 5'- ---cGGuGCCGggGCGCCCGCacgauGUCUg -3' miRNA: 3'- uuuuCCuUGGCuaCGCGGGCG-----CAGAg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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