miRNA display CGI


Results 21 - 40 of 49 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5517 3' -55.4 NC_001798.1 + 47607 0.66 0.897127
Target:  5'- -cGAGGAGCUGuacuAUG-GCCCG-GUCUCc -3'
miRNA:   3'- uuUUCCUUGGC----UACgCGGGCgCAGAG- -5'
5517 3' -55.4 NC_001798.1 + 47862 0.66 0.890408
Target:  5'- --cGGGGGCCccguggGCGCCgGCGggcgCUCg -3'
miRNA:   3'- uuuUCCUUGGcua---CGCGGgCGCa---GAG- -5'
5517 3' -55.4 NC_001798.1 + 56533 0.7 0.70551
Target:  5'- ---cGGuGCCGggGCGCCCGCacgauGUCUg -3'
miRNA:   3'- uuuuCCuUGGCuaCGCGGGCG-----CAGAg -5'
5517 3' -55.4 NC_001798.1 + 57542 0.67 0.868866
Target:  5'- -cGGGGGGCgGAUGCGuUCCGCGg--- -3'
miRNA:   3'- uuUUCCUUGgCUACGC-GGGCGCagag -5'
5517 3' -55.4 NC_001798.1 + 59556 0.67 0.853403
Target:  5'- gAGAGGGGGCUGGg--GCUCGCGUCg- -3'
miRNA:   3'- -UUUUCCUUGGCUacgCGGGCGCAGag -5'
5517 3' -55.4 NC_001798.1 + 59831 0.74 0.501076
Target:  5'- -uGGGGcGCCGcgGuCGCCCGCGUC-Cg -3'
miRNA:   3'- uuUUCCuUGGCuaC-GCGGGCGCAGaG- -5'
5517 3' -55.4 NC_001798.1 + 74739 0.67 0.883455
Target:  5'- uGGAGGGGACCc---CGCCCGCGaagccCUCg -3'
miRNA:   3'- -UUUUCCUUGGcuacGCGGGCGCa----GAG- -5'
5517 3' -55.4 NC_001798.1 + 79147 0.75 0.462644
Target:  5'- uGGAGGAGCUGG-GCGCgCGCGUCa- -3'
miRNA:   3'- uUUUCCUUGGCUaCGCGgGCGCAGag -5'
5517 3' -55.4 NC_001798.1 + 79393 0.66 0.921605
Target:  5'- --cGGGcGCgGAguccGCGCCCGCGccccugCUCg -3'
miRNA:   3'- uuuUCCuUGgCUa---CGCGGGCGCa-----GAG- -5'
5517 3' -55.4 NC_001798.1 + 79963 0.66 0.921605
Target:  5'- ---cGGAGCgGcgGCGCC-GCGUC-Cg -3'
miRNA:   3'- uuuuCCUUGgCuaCGCGGgCGCAGaG- -5'
5517 3' -55.4 NC_001798.1 + 84791 0.69 0.764966
Target:  5'- aGGAGGGAggccaGCCGcUGCGUCCGCGa--- -3'
miRNA:   3'- -UUUUCCU-----UGGCuACGCGGGCGCagag -5'
5517 3' -55.4 NC_001798.1 + 85294 0.68 0.845359
Target:  5'- --cGGGGGCCGGggucCGCCCGCGg--- -3'
miRNA:   3'- uuuUCCUUGGCUac--GCGGGCGCagag -5'
5517 3' -55.4 NC_001798.1 + 87026 0.66 0.909851
Target:  5'- -cGAGGAgaucGCCaucGUGCGCUCGC-UCUCc -3'
miRNA:   3'- uuUUCCU----UGGc--UACGCGGGCGcAGAG- -5'
5517 3' -55.4 NC_001798.1 + 87996 0.68 0.837116
Target:  5'- -cGGGGggUCGGcaUGCGaCgGCGUCUCc -3'
miRNA:   3'- uuUUCCuuGGCU--ACGCgGgCGCAGAG- -5'
5517 3' -55.4 NC_001798.1 + 102654 0.72 0.591928
Target:  5'- cGGAGGGGCCGggGCGCCCGaUGcCg- -3'
miRNA:   3'- uUUUCCUUGGCuaCGCGGGC-GCaGag -5'
5517 3' -55.4 NC_001798.1 + 103003 0.68 0.820062
Target:  5'- --cGGGGGCCcaGGUGCGCCCggccaGCGcgagCUCg -3'
miRNA:   3'- uuuUCCUUGG--CUACGCGGG-----CGCa---GAG- -5'
5517 3' -55.4 NC_001798.1 + 103744 0.66 0.897127
Target:  5'- ----cGGGCCGGgacuaaaGCCCGCGUUUCg -3'
miRNA:   3'- uuuucCUUGGCUacg----CGGGCGCAGAG- -5'
5517 3' -55.4 NC_001798.1 + 111892 0.66 0.921605
Target:  5'- --cGGGAGCCGGgggaggUGCGCCUGgGcCa- -3'
miRNA:   3'- uuuUCCUUGGCU------ACGCGGGCgCaGag -5'
5517 3' -55.4 NC_001798.1 + 121569 0.68 0.845359
Target:  5'- --uGGGcGACC--UGUGCCCGCGUgCUCc -3'
miRNA:   3'- uuuUCC-UUGGcuACGCGGGCGCA-GAG- -5'
5517 3' -55.4 NC_001798.1 + 123409 0.67 0.861241
Target:  5'- --cGGGAGCCGcgGC-CCCGCcggGUCa- -3'
miRNA:   3'- uuuUCCUUGGCuaCGcGGGCG---CAGag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.