miRNA display CGI


Results 21 - 40 of 49 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5517 3' -55.4 NC_001798.1 + 79393 0.66 0.921605
Target:  5'- --cGGGcGCgGAguccGCGCCCGCGccccugCUCg -3'
miRNA:   3'- uuuUCCuUGgCUa---CGCGGGCGCa-----GAG- -5'
5517 3' -55.4 NC_001798.1 + 79147 0.75 0.462644
Target:  5'- uGGAGGAGCUGG-GCGCgCGCGUCa- -3'
miRNA:   3'- uUUUCCUUGGCUaCGCGgGCGCAGag -5'
5517 3' -55.4 NC_001798.1 + 74739 0.67 0.883455
Target:  5'- uGGAGGGGACCc---CGCCCGCGaagccCUCg -3'
miRNA:   3'- -UUUUCCUUGGcuacGCGGGCGCa----GAG- -5'
5517 3' -55.4 NC_001798.1 + 59831 0.74 0.501076
Target:  5'- -uGGGGcGCCGcgGuCGCCCGCGUC-Cg -3'
miRNA:   3'- uuUUCCuUGGCuaC-GCGGGCGCAGaG- -5'
5517 3' -55.4 NC_001798.1 + 59556 0.67 0.853403
Target:  5'- gAGAGGGGGCUGGg--GCUCGCGUCg- -3'
miRNA:   3'- -UUUUCCUUGGCUacgCGGGCGCAGag -5'
5517 3' -55.4 NC_001798.1 + 57542 0.67 0.868866
Target:  5'- -cGGGGGGCgGAUGCGuUCCGCGg--- -3'
miRNA:   3'- uuUUCCUUGgCUACGC-GGGCGCagag -5'
5517 3' -55.4 NC_001798.1 + 56533 0.7 0.70551
Target:  5'- ---cGGuGCCGggGCGCCCGCacgauGUCUg -3'
miRNA:   3'- uuuuCCuUGGCuaCGCGGGCG-----CAGAg -5'
5517 3' -55.4 NC_001798.1 + 47862 0.66 0.890408
Target:  5'- --cGGGGGCCccguggGCGCCgGCGggcgCUCg -3'
miRNA:   3'- uuuUCCUUGGcua---CGCGGgCGCa---GAG- -5'
5517 3' -55.4 NC_001798.1 + 47607 0.66 0.897127
Target:  5'- -cGAGGAGCUGuacuAUG-GCCCG-GUCUCc -3'
miRNA:   3'- uuUUCCUUGGC----UACgCGGGCgCAGAG- -5'
5517 3' -55.4 NC_001798.1 + 39415 0.66 0.897127
Target:  5'- ---cGGGACCGggGCGCggccguCCGCGUg-- -3'
miRNA:   3'- uuuuCCUUGGCuaCGCG------GGCGCAgag -5'
5517 3' -55.4 NC_001798.1 + 36224 0.73 0.561135
Target:  5'- ----cGAccGCCGccGCGCCCGCGUUUCu -3'
miRNA:   3'- uuuucCU--UGGCuaCGCGGGCGCAGAG- -5'
5517 3' -55.4 NC_001798.1 + 32777 0.67 0.853403
Target:  5'- --cGGGAGCagGgcGCGCCCGCGcCg- -3'
miRNA:   3'- uuuUCCUUGg-CuaCGCGGGCGCaGag -5'
5517 3' -55.4 NC_001798.1 + 32242 0.68 0.820062
Target:  5'- ---cGGGGCUGGUgggagcgucGCGUCCGCGUC-Cg -3'
miRNA:   3'- uuuuCCUUGGCUA---------CGCGGGCGCAGaG- -5'
5517 3' -55.4 NC_001798.1 + 27552 0.66 0.909851
Target:  5'- cGGGGGGAGggGcgGCGCCCGCGg--- -3'
miRNA:   3'- -UUUUCCUUggCuaCGCGGGCGCagag -5'
5517 3' -55.4 NC_001798.1 + 25877 0.67 0.860467
Target:  5'- ---cGGAcuggcccGCCGAcGgGCCCGUgGUCUCg -3'
miRNA:   3'- uuuuCCU-------UGGCUaCgCGGGCG-CAGAG- -5'
5517 3' -55.4 NC_001798.1 + 25723 0.66 0.890408
Target:  5'- ----uGGACCGgcGCcCCCGaCGUCUCg -3'
miRNA:   3'- uuuucCUUGGCuaCGcGGGC-GCAGAG- -5'
5517 3' -55.4 NC_001798.1 + 24807 0.69 0.793186
Target:  5'- ---uGGuGCUGAUGCGCCUGCG-Cg- -3'
miRNA:   3'- uuuuCCuUGGCUACGCGGGCGCaGag -5'
5517 3' -55.4 NC_001798.1 + 23549 0.67 0.861241
Target:  5'- -cGAGGAGgCGGggGUGCCCGCGa--- -3'
miRNA:   3'- uuUUCCUUgGCUa-CGCGGGCGCagag -5'
5517 3' -55.4 NC_001798.1 + 22203 0.68 0.827827
Target:  5'- -cAGGGGAgCGAgccCGCCCGCGacgagggUCUCa -3'
miRNA:   3'- uuUUCCUUgGCUac-GCGGGCGC-------AGAG- -5'
5517 3' -55.4 NC_001798.1 + 21592 1.07 0.00386
Target:  5'- gAAAAGGAACCGAUGCGCCCGCGUCUCu -3'
miRNA:   3'- -UUUUCCUUGGCUACGCGGGCGCAGAG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.