miRNA display CGI


Results 1 - 20 of 49 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5517 3' -55.4 NC_001798.1 + 153767 0.72 0.63337
Target:  5'- cGGAAGGGGgCGcUGCgGCCCGCG-CUCc -3'
miRNA:   3'- -UUUUCCUUgGCuACG-CGGGCGCaGAG- -5'
5517 3' -55.4 NC_001798.1 + 152302 0.66 0.909851
Target:  5'- -uAGGGuaGACuCGAgacgGCgGCCCGCgGUCUCu -3'
miRNA:   3'- uuUUCC--UUG-GCUa---CG-CGGGCG-CAGAG- -5'
5517 3' -55.4 NC_001798.1 + 151614 0.68 0.837116
Target:  5'- --cGGGGGCCGGgccggggGCGUggCCGCGUCcaUCa -3'
miRNA:   3'- uuuUCCUUGGCUa------CGCG--GGCGCAG--AG- -5'
5517 3' -55.4 NC_001798.1 + 150386 0.66 0.897127
Target:  5'- ---cGGGcCCGGccGCGUCCGCG-CUCg -3'
miRNA:   3'- uuuuCCUuGGCUa-CGCGGGCGCaGAG- -5'
5517 3' -55.4 NC_001798.1 + 149979 0.68 0.828681
Target:  5'- ---cGGGGgCGcgGCGCCCGCGg--- -3'
miRNA:   3'- uuuuCCUUgGCuaCGCGGGCGCagag -5'
5517 3' -55.4 NC_001798.1 + 147488 0.66 0.908004
Target:  5'- -cGGGGGACCcaggcuccggggggGGgggGCGCCUGCGugugUCUCg -3'
miRNA:   3'- uuUUCCUUGG--------------CUa--CGCGGGCGC----AGAG- -5'
5517 3' -55.4 NC_001798.1 + 137616 0.69 0.773559
Target:  5'- ---cGGAGCCGGUgaugagcGCGCCCGC-UCg- -3'
miRNA:   3'- uuuuCCUUGGCUA-------CGCGGGCGcAGag -5'
5517 3' -55.4 NC_001798.1 + 137485 0.66 0.897127
Target:  5'- gGAGGGGGGCCGggGCaGagCCGCGUgCUg -3'
miRNA:   3'- -UUUUCCUUGGCuaCG-Cg-GGCGCA-GAg -5'
5517 3' -55.4 NC_001798.1 + 126078 0.72 0.601227
Target:  5'- cAGGAGGAgcagcucgaagagGCCGcgGCGaaCGCGUCUCu -3'
miRNA:   3'- -UUUUCCU-------------UGGCuaCGCggGCGCAGAG- -5'
5517 3' -55.4 NC_001798.1 + 123409 0.67 0.861241
Target:  5'- --cGGGAGCCGcgGC-CCCGCcggGUCa- -3'
miRNA:   3'- uuuUCCUUGGCuaCGcGGGCG---CAGag -5'
5517 3' -55.4 NC_001798.1 + 121569 0.68 0.845359
Target:  5'- --uGGGcGACC--UGUGCCCGCGUgCUCc -3'
miRNA:   3'- uuuUCC-UUGGcuACGCGGGCGCA-GAG- -5'
5517 3' -55.4 NC_001798.1 + 111892 0.66 0.921605
Target:  5'- --cGGGAGCCGGgggaggUGCGCCUGgGcCa- -3'
miRNA:   3'- uuuUCCUUGGCU------ACGCGGGCgCaGag -5'
5517 3' -55.4 NC_001798.1 + 103744 0.66 0.897127
Target:  5'- ----cGGGCCGGgacuaaaGCCCGCGUUUCg -3'
miRNA:   3'- uuuucCUUGGCUacg----CGGGCGCAGAG- -5'
5517 3' -55.4 NC_001798.1 + 103003 0.68 0.820062
Target:  5'- --cGGGGGCCcaGGUGCGCCCggccaGCGcgagCUCg -3'
miRNA:   3'- uuuUCCUUGG--CUACGCGGG-----CGCa---GAG- -5'
5517 3' -55.4 NC_001798.1 + 102654 0.72 0.591928
Target:  5'- cGGAGGGGCCGggGCGCCCGaUGcCg- -3'
miRNA:   3'- uUUUCCUUGGCuaCGCGGGC-GCaGag -5'
5517 3' -55.4 NC_001798.1 + 87996 0.68 0.837116
Target:  5'- -cGGGGggUCGGcaUGCGaCgGCGUCUCc -3'
miRNA:   3'- uuUUCCuuGGCU--ACGCgGgCGCAGAG- -5'
5517 3' -55.4 NC_001798.1 + 87026 0.66 0.909851
Target:  5'- -cGAGGAgaucGCCaucGUGCGCUCGC-UCUCc -3'
miRNA:   3'- uuUUCCU----UGGc--UACGCGGGCGcAGAG- -5'
5517 3' -55.4 NC_001798.1 + 85294 0.68 0.845359
Target:  5'- --cGGGGGCCGGggucCGCCCGCGg--- -3'
miRNA:   3'- uuuUCCUUGGCUac--GCGGGCGCagag -5'
5517 3' -55.4 NC_001798.1 + 84791 0.69 0.764966
Target:  5'- aGGAGGGAggccaGCCGcUGCGUCCGCGa--- -3'
miRNA:   3'- -UUUUCCU-----UGGCuACGCGGGCGCagag -5'
5517 3' -55.4 NC_001798.1 + 79963 0.66 0.921605
Target:  5'- ---cGGAGCgGcgGCGCC-GCGUC-Cg -3'
miRNA:   3'- uuuuCCUUGgCuaCGCGGgCGCAGaG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.