Results 41 - 49 of 49 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position
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R_P_ratio# | P value |
| Predicted miRNA align pattern | |||||||
| 5517 | 3' | -55.4 | NC_001798.1 | + | 126078 | 0.72 | 0.601227 |
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Target: 5'- cAGGAGGAgcagcucgaagagGCCGcgGCGaaCGCGUCUCu -3' miRNA: 3'- -UUUUCCU-------------UGGCuaCGCggGCGCAGAG- -5' |
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| 5517 | 3' | -55.4 | NC_001798.1 | + | 137485 | 0.66 | 0.897127 |
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Target: 5'- gGAGGGGGGCCGggGCaGagCCGCGUgCUg -3' miRNA: 3'- -UUUUCCUUGGCuaCG-Cg-GGCGCA-GAg -5' |
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| 5517 | 3' | -55.4 | NC_001798.1 | + | 137616 | 0.69 | 0.773559 |
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Target: 5'- ---cGGAGCCGGUgaugagcGCGCCCGC-UCg- -3' miRNA: 3'- uuuuCCUUGGCUA-------CGCGGGCGcAGag -5' |
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| 5517 | 3' | -55.4 | NC_001798.1 | + | 147488 | 0.66 | 0.908004 |
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Target: 5'- -cGGGGGACCcaggcuccggggggGGgggGCGCCUGCGugugUCUCg -3' miRNA: 3'- uuUUCCUUGG--------------CUa--CGCGGGCGC----AGAG- -5' |
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| 5517 | 3' | -55.4 | NC_001798.1 | + | 149979 | 0.68 | 0.828681 |
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Target: 5'- ---cGGGGgCGcgGCGCCCGCGg--- -3' miRNA: 3'- uuuuCCUUgGCuaCGCGGGCGCagag -5' |
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| 5517 | 3' | -55.4 | NC_001798.1 | + | 150386 | 0.66 | 0.897127 |
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Target: 5'- ---cGGGcCCGGccGCGUCCGCG-CUCg -3' miRNA: 3'- uuuuCCUuGGCUa-CGCGGGCGCaGAG- -5' |
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| 5517 | 3' | -55.4 | NC_001798.1 | + | 151614 | 0.68 | 0.837116 |
|
Target: 5'- --cGGGGGCCGGgccggggGCGUggCCGCGUCcaUCa -3' miRNA: 3'- uuuUCCUUGGCUa------CGCG--GGCGCAG--AG- -5' |
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| 5517 | 3' | -55.4 | NC_001798.1 | + | 152302 | 0.66 | 0.909851 |
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Target: 5'- -uAGGGuaGACuCGAgacgGCgGCCCGCgGUCUCu -3' miRNA: 3'- uuUUCC--UUG-GCUa---CG-CGGGCG-CAGAG- -5' |
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| 5517 | 3' | -55.4 | NC_001798.1 | + | 153767 | 0.72 | 0.63337 |
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Target: 5'- cGGAAGGGGgCGcUGCgGCCCGCG-CUCc -3' miRNA: 3'- -UUUUCCUUgGCuACG-CGGGCGCaGAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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