miRNA display CGI


Results 21 - 40 of 44 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5519 3' -56.4 NC_001798.1 + 32428 0.7 0.703934
Target:  5'- gGGGGUCUCG--AGCGUCGUGgcccuGGCGc- -3'
miRNA:   3'- -UCCCAGAGUaaUCGUAGCGC-----CCGCcu -5'
5519 3' -56.4 NC_001798.1 + 34305 0.68 0.817145
Target:  5'- cGGGUU-----GGC-UCGCGGGCGGu -3'
miRNA:   3'- uCCCAGaguaaUCGuAGCGCCCGCCu -5'
5519 3' -56.4 NC_001798.1 + 35790 0.67 0.842262
Target:  5'- uGGGUCUCcuucgucgGGCggCGgGGGgGGGg -3'
miRNA:   3'- uCCCAGAGuaa-----UCGuaGCgCCCgCCU- -5'
5519 3' -56.4 NC_001798.1 + 45920 0.72 0.571752
Target:  5'- cGGGUCUCGgggggUGGCgGUCGCGucCGGAa -3'
miRNA:   3'- uCCCAGAGUa----AUCG-UAGCGCccGCCU- -5'
5519 3' -56.4 NC_001798.1 + 63250 0.72 0.56168
Target:  5'- gAGGGgaaagcUGGCGUCGgGGGCGGGg -3'
miRNA:   3'- -UCCCagaguaAUCGUAGCgCCCGCCU- -5'
5519 3' -56.4 NC_001798.1 + 72674 0.68 0.790521
Target:  5'- gAGGGUaaCGUgcUGGcCGUCGUGcGGCGGGa -3'
miRNA:   3'- -UCCCAgaGUA--AUC-GUAGCGC-CCGCCU- -5'
5519 3' -56.4 NC_001798.1 + 78951 0.66 0.88023
Target:  5'- uGGGGUCgcuUUGGCcgCGUccGGGgGGGc -3'
miRNA:   3'- -UCCCAGaguAAUCGuaGCG--CCCgCCU- -5'
5519 3' -56.4 NC_001798.1 + 83650 0.71 0.622618
Target:  5'- gAGGGgaugugcggCUCGcgGGCGUCugggaugcacugGCGGGCGGGa -3'
miRNA:   3'- -UCCCa--------GAGUaaUCGUAG------------CGCCCGCCU- -5'
5519 3' -56.4 NC_001798.1 + 99249 0.68 0.813678
Target:  5'- gGGGGUggcacaccaccgacCUCA--AGUAcaaccccUCGCGGGUGGAg -3'
miRNA:   3'- -UCCCA--------------GAGUaaUCGU-------AGCGCCCGCCU- -5'
5519 3' -56.4 NC_001798.1 + 102045 0.67 0.842262
Target:  5'- gGGGGUCUCcgUGucuGCGUgG-GGGUGGu -3'
miRNA:   3'- -UCCCAGAGuaAU---CGUAgCgCCCGCCu -5'
5519 3' -56.4 NC_001798.1 + 105597 0.7 0.693889
Target:  5'- cGGGUC-CAUguucgagGGCG--GCGGGCGGGc -3'
miRNA:   3'- uCCCAGaGUAa------UCGUagCGCCCGCCU- -5'
5519 3' -56.4 NC_001798.1 + 111821 0.68 0.790521
Target:  5'- cGGGcGUC-CAggGGCuggCGCgGGGCGGGa -3'
miRNA:   3'- -UCC-CAGaGUaaUCGua-GCG-CCCGCCU- -5'
5519 3' -56.4 NC_001798.1 + 134349 0.67 0.842262
Target:  5'- gAGGGUCgaaagGGCGUCGUGGGgcccgcCGGc -3'
miRNA:   3'- -UCCCAGaguaaUCGUAGCGCCC------GCCu -5'
5519 3' -56.4 NC_001798.1 + 143657 0.67 0.825696
Target:  5'- cGGGUUUCGaggUAGCGauUCGCGGcGaGGAa -3'
miRNA:   3'- uCCCAGAGUa--AUCGU--AGCGCC-CgCCU- -5'
5519 3' -56.4 NC_001798.1 + 145785 0.75 0.402024
Target:  5'- cGGGGUCcacaCAggAGCG-CGCGGGCGGc -3'
miRNA:   3'- -UCCCAGa---GUaaUCGUaGCGCCCGCCu -5'
5519 3' -56.4 NC_001798.1 + 146082 0.75 0.437112
Target:  5'- aGGGGUC-Cgg-GGCGagGCGGGCGGGc -3'
miRNA:   3'- -UCCCAGaGuaaUCGUagCGCCCGCCU- -5'
5519 3' -56.4 NC_001798.1 + 147158 0.71 0.653281
Target:  5'- gGGGGUCcCGggUAGCcgcccggCGcCGGGCGGAa -3'
miRNA:   3'- -UCCCAGaGUa-AUCGua-----GC-GCCCGCCU- -5'
5519 3' -56.4 NC_001798.1 + 148276 0.71 0.622618
Target:  5'- gAGGGgCgggCGUggcgGGCAggugUGCGGGCGGGg -3'
miRNA:   3'- -UCCCaGa--GUAa---UCGUa---GCGCCCGCCU- -5'
5519 3' -56.4 NC_001798.1 + 148383 0.71 0.622618
Target:  5'- gAGGGgCgggCGUggcgGGCAggugUGCGGGCGGGg -3'
miRNA:   3'- -UCCCaGa--GUAa---UCGUa---GCGCCCGCCU- -5'
5519 3' -56.4 NC_001798.1 + 150419 0.67 0.850263
Target:  5'- cGGGGg--CGgcGGCggCGCgGGGCGGAc -3'
miRNA:   3'- -UCCCagaGUaaUCGuaGCG-CCCGCCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.