Results 61 - 69 of 69 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio #
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P value |
| Predicted miRNA align pattern | |||||||
| 5519 | 5' | -59.2 | NC_001798.1 | + | 2994 | 0.72 | 0.410007 |
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Target: 5'- gGCCCGCGggccCCGGGCGCg---GGGGc- -3' miRNA: 3'- gCGGGCGC----GGCCCGCGauuaCUCUac -5' |
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| 5519 | 5' | -59.2 | NC_001798.1 | + | 55975 | 0.73 | 0.401583 |
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Target: 5'- aGCCCGCGCCGGGgaggcCGCgggGGcGAGGg- -3' miRNA: 3'- gCGGGCGCGGCCC-----GCGa--UUaCUCUac -5' |
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| 5519 | 5' | -59.2 | NC_001798.1 | + | 151156 | 0.73 | 0.38507 |
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Target: 5'- uCGUCCGUGCCGGGCcacgggGGGGUGg -3' miRNA: 3'- -GCGGGCGCGGCCCGcgauuaCUCUAC- -5' |
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| 5519 | 5' | -59.2 | NC_001798.1 | + | 9662 | 0.73 | 0.376983 |
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Target: 5'- gGCCgCGCGCggaGGGCGCggGAUGGGGg- -3' miRNA: 3'- gCGG-GCGCGg--CCCGCGa-UUACUCUac -5' |
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| 5519 | 5' | -59.2 | NC_001798.1 | + | 79180 | 0.74 | 0.323653 |
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Target: 5'- cCGCCCuguGCGCCcGGCuGCggGAUGAGGUGg -3' miRNA: 3'- -GCGGG---CGCGGcCCG-CGa-UUACUCUAC- -5' |
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| 5519 | 5' | -59.2 | NC_001798.1 | + | 101799 | 0.75 | 0.302581 |
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Target: 5'- gGCcuCCGCGCCGGGCGCcucggguUGGGGUa -3' miRNA: 3'- gCG--GGCGCGGCCCGCGauu----ACUCUAc -5' |
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| 5519 | 5' | -59.2 | NC_001798.1 | + | 34873 | 0.77 | 0.240011 |
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Target: 5'- cCGCCCgGCGCCGGGCgGCUAcccGGGAc- -3' miRNA: 3'- -GCGGG-CGCGGCCCG-CGAUua-CUCUac -5' |
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| 5519 | 5' | -59.2 | NC_001798.1 | + | 32261 | 0.77 | 0.234386 |
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Target: 5'- gCGUCCGCGUCcGGCGCUGggGAGAg- -3' miRNA: 3'- -GCGGGCGCGGcCCGCGAUuaCUCUac -5' |
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| 5519 | 5' | -59.2 | NC_001798.1 | + | 22262 | 1.07 | 0.001929 |
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Target: 5'- cCGCCCGCGCCGGGCGCUAAUGAGAUGc -3' miRNA: 3'- -GCGGGCGCGGCCCGCGAUUACUCUAC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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