miRNA display CGI


Results 41 - 60 of 69 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5519 5' -59.2 NC_001798.1 + 31246 0.69 0.607348
Target:  5'- gCGCCC-CGUugCGGGCGggGGUGGGAUc -3'
miRNA:   3'- -GCGGGcGCG--GCCCGCgaUUACUCUAc -5'
5519 5' -59.2 NC_001798.1 + 141484 0.69 0.607348
Target:  5'- uCG-CCGCGCgGGGgGCUGAUGuccGUGg -3'
miRNA:   3'- -GCgGGCGCGgCCCgCGAUUACuc-UAC- -5'
5519 5' -59.2 NC_001798.1 + 154177 0.69 0.607348
Target:  5'- gGCCCGgaGCCGGaGCGCgucgGGGcgGg -3'
miRNA:   3'- gCGGGCg-CGGCC-CGCGauuaCUCuaC- -5'
5519 5' -59.2 NC_001798.1 + 129295 0.69 0.627368
Target:  5'- gGCaCCGCG-CGGGCGCggagGAGGg- -3'
miRNA:   3'- gCG-GGCGCgGCCCGCGauuaCUCUac -5'
5519 5' -59.2 NC_001798.1 + 96676 0.69 0.627368
Target:  5'- aCGgCCGCGCUGGaGCGCguccGGGAg- -3'
miRNA:   3'- -GCgGGCGCGGCC-CGCGauuaCUCUac -5'
5519 5' -59.2 NC_001798.1 + 96093 0.69 0.627368
Target:  5'- aGUCCGCGCgGGGCGCgccucUGAc--- -3'
miRNA:   3'- gCGGGCGCGgCCCGCGauu--ACUcuac -5'
5519 5' -59.2 NC_001798.1 + 26518 0.69 0.627368
Target:  5'- uGgCCGCGgCGGGCgGCggcgugGAGGUGg -3'
miRNA:   3'- gCgGGCGCgGCCCG-CGauua--CUCUAC- -5'
5519 5' -59.2 NC_001798.1 + 39844 0.69 0.617353
Target:  5'- cCGCCgCGCuGCCGGGCgaggcgucgagGCUucgGGGGUGc -3'
miRNA:   3'- -GCGG-GCG-CGGCCCG-----------CGAuuaCUCUAC- -5'
5519 5' -59.2 NC_001798.1 + 140194 0.69 0.607348
Target:  5'- cCGCCUGCgGCC-GGUGCUGGUGuGcGUGg -3'
miRNA:   3'- -GCGGGCG-CGGcCCGCGAUUACuC-UAC- -5'
5519 5' -59.2 NC_001798.1 + 4195 0.7 0.567573
Target:  5'- cCGCCCGCGgCGuggucugcGGCGCUGGcGGGGg- -3'
miRNA:   3'- -GCGGGCGCgGC--------CCGCGAUUaCUCUac -5'
5519 5' -59.2 NC_001798.1 + 129043 0.7 0.557722
Target:  5'- cCGCCC-CGgaUCGGGCGCUGGUG-GAg- -3'
miRNA:   3'- -GCGGGcGC--GGCCCGCGAUUACuCUac -5'
5519 5' -59.2 NC_001798.1 + 56407 0.7 0.546943
Target:  5'- gGuCCCGCGgCGGGgGCUGGUGGcugccguGGUGc -3'
miRNA:   3'- gC-GGGCGCgGCCCgCGAUUACU-------CUAC- -5'
5519 5' -59.2 NC_001798.1 + 150903 0.71 0.462761
Target:  5'- cCGCCCccGCGCCGGGgCGCUcuucGggGGGcgGg -3'
miRNA:   3'- -GCGGG--CGCGGCCC-GCGA----UuaCUCuaC- -5'
5519 5' -59.2 NC_001798.1 + 125701 0.71 0.471899
Target:  5'- aGUCCGaCGUCGGGCGCgcgcgGGggcggcGAGAUGa -3'
miRNA:   3'- gCGGGC-GCGGCCCGCGa----UUa-----CUCUAC- -5'
5519 5' -59.2 NC_001798.1 + 131335 0.71 0.471899
Target:  5'- cCGCCCGCGCCccGGGCGCg--------- -3'
miRNA:   3'- -GCGGGCGCGG--CCCGCGauuacucuac -5'
5519 5' -59.2 NC_001798.1 + 85987 0.71 0.481126
Target:  5'- aGgCCGcCGCCgGGGCGCUGGcgcaggGGGGUGa -3'
miRNA:   3'- gCgGGC-GCGG-CCCGCGAUUa-----CUCUAC- -5'
5519 5' -59.2 NC_001798.1 + 59459 0.71 0.499838
Target:  5'- -cCCCGCGugcCCGGGCGC-GGUGAGGc- -3'
miRNA:   3'- gcGGGCGC---GGCCCGCGaUUACUCUac -5'
5519 5' -59.2 NC_001798.1 + 52764 0.72 0.453718
Target:  5'- uCGcCCCGCGuccucggcgccCCGGGCGCccGUGAGcgGg -3'
miRNA:   3'- -GC-GGGCGC-----------GGCCCGCGauUACUCuaC- -5'
5519 5' -59.2 NC_001798.1 + 146509 0.72 0.410007
Target:  5'- aCGcCCCGCGCCGGcCGCgGcgGAGAg- -3'
miRNA:   3'- -GC-GGGCGCGGCCcGCGaUuaCUCUac -5'
5519 5' -59.2 NC_001798.1 + 2994 0.72 0.410007
Target:  5'- gGCCCGCGggccCCGGGCGCg---GGGGc- -3'
miRNA:   3'- gCGGGCGC----GGCCCGCGauuaCUCUac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.