miRNA display CGI


Results 41 - 60 of 69 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5519 5' -59.2 NC_001798.1 + 3774 0.66 0.782662
Target:  5'- gCGCCCacacggGCGCCgGGGCGCcc--GAGGc- -3'
miRNA:   3'- -GCGGG------CGCGG-CCCGCGauuaCUCUac -5'
5519 5' -59.2 NC_001798.1 + 7712 0.66 0.782662
Target:  5'- uGCCCGCGgaccaCCGGGCcuuuuuucggacGgUGAUcGAGGUGu -3'
miRNA:   3'- gCGGGCGC-----GGCCCG------------CgAUUA-CUCUAC- -5'
5519 5' -59.2 NC_001798.1 + 113629 0.66 0.782662
Target:  5'- uCGCCUGCGCgGccGGCGCcgccAUGuGGGUGg -3'
miRNA:   3'- -GCGGGCGCGgC--CCGCGau--UAC-UCUAC- -5'
5519 5' -59.2 NC_001798.1 + 32789 0.66 0.788954
Target:  5'- gCGCCCGCGCCGGccggcgacgcccccGCggGCcAcgGGGAg- -3'
miRNA:   3'- -GCGGGCGCGGCC--------------CG--CGaUuaCUCUac -5'
5519 5' -59.2 NC_001798.1 + 52079 0.67 0.745578
Target:  5'- cCGCCCGCuacGCgGGGCGC--AUGAcGUa -3'
miRNA:   3'- -GCGGGCG---CGgCCCGCGauUACUcUAc -5'
5519 5' -59.2 NC_001798.1 + 79444 0.66 0.791631
Target:  5'- aCGCCCGCGCCcGGGCcuCUucuucccccGAGGg- -3'
miRNA:   3'- -GCGGGCGCGG-CCCGc-GAuua------CUCUac -5'
5519 5' -59.2 NC_001798.1 + 102638 0.66 0.791631
Target:  5'- -uCCCGuCGCCGGGCgGCg---GAGGg- -3'
miRNA:   3'- gcGGGC-GCGGCCCG-CGauuaCUCUac -5'
5519 5' -59.2 NC_001798.1 + 110526 0.66 0.791631
Target:  5'- gCGUCCGCGCUGGGgGUcguuAUGAu--- -3'
miRNA:   3'- -GCGGGCGCGGCCCgCGau--UACUcuac -5'
5519 5' -59.2 NC_001798.1 + 33137 0.66 0.791631
Target:  5'- -cCCCGCGCagGGGgGCcgggGAUGGGggGg -3'
miRNA:   3'- gcGGGCGCGg-CCCgCGa---UUACUCuaC- -5'
5519 5' -59.2 NC_001798.1 + 25602 0.66 0.79252
Target:  5'- gGgCCGCGCCGGGgGCgggccccccccgGAG-UGg -3'
miRNA:   3'- gCgGGCGCGGCCCgCGauua--------CUCuAC- -5'
5519 5' -59.2 NC_001798.1 + 71103 0.66 0.800461
Target:  5'- gCGUgCGCGCCcccgGGGaCGCUGAUGGc--- -3'
miRNA:   3'- -GCGgGCGCGG----CCC-GCGAUUACUcuac -5'
5519 5' -59.2 NC_001798.1 + 152268 0.66 0.800461
Target:  5'- aGCUCGUGCCGGGCcgggGUUccAUGAGccGg -3'
miRNA:   3'- gCGGGCGCGGCCCG----CGAu-UACUCuaC- -5'
5519 5' -59.2 NC_001798.1 + 59700 0.67 0.716735
Target:  5'- aCGCCCGUcuUCGGGCGCUu----GGUGg -3'
miRNA:   3'- -GCGGGCGc-GGCCCGCGAuuacuCUAC- -5'
5519 5' -59.2 NC_001798.1 + 9162 0.68 0.647402
Target:  5'- cCGCCCGCGCCGGGgGgcagggucuCUGGcGGGu-- -3'
miRNA:   3'- -GCGGGCGCGGCCCgC---------GAUUaCUCuac -5'
5519 5' -59.2 NC_001798.1 + 96934 0.68 0.677347
Target:  5'- cCGCCCGCGCgCGaGCGCUcuGUGuGcUGg -3'
miRNA:   3'- -GCGGGCGCG-GCcCGCGAu-UACuCuAC- -5'
5519 5' -59.2 NC_001798.1 + 9767 0.67 0.697145
Target:  5'- gGUaCUGCGCCGcGGUGCUGAUGGucauGUGg -3'
miRNA:   3'- gCG-GGCGCGGC-CCGCGAUUACUc---UAC- -5'
5519 5' -59.2 NC_001798.1 + 4359 0.67 0.697145
Target:  5'- gCGCCggcggggggCGCGCCGgcGGCGgUGGUGGuGGUGg -3'
miRNA:   3'- -GCGG---------GCGCGGC--CCGCgAUUACU-CUAC- -5'
5519 5' -59.2 NC_001798.1 + 93631 0.67 0.70697
Target:  5'- aGUCauCGUCGGGCGCcag-GAGAUGg -3'
miRNA:   3'- gCGGgcGCGGCCCGCGauuaCUCUAC- -5'
5519 5' -59.2 NC_001798.1 + 27522 0.67 0.70697
Target:  5'- gCGCCCGCGggaaggcagccCCGcGGCGCgcgggGGGAg- -3'
miRNA:   3'- -GCGGGCGC-----------GGC-CCGCGauua-CUCUac -5'
5519 5' -59.2 NC_001798.1 + 133755 0.67 0.70697
Target:  5'- gCGCCCGCGUgGgGGCGCUGc------- -3'
miRNA:   3'- -GCGGGCGCGgC-CCGCGAUuacucuac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.