miRNA display CGI


Results 41 - 60 of 69 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5519 5' -59.2 NC_001798.1 + 27522 0.67 0.70697
Target:  5'- gCGCCCGCGggaaggcagccCCGcGGCGCgcgggGGGAg- -3'
miRNA:   3'- -GCGGGCGC-----------GGC-CCGCGauua-CUCUac -5'
5519 5' -59.2 NC_001798.1 + 133755 0.67 0.70697
Target:  5'- gCGCCCGCGUgGgGGCGCUGc------- -3'
miRNA:   3'- -GCGGGCGCGgC-CCGCGAUuacucuac -5'
5519 5' -59.2 NC_001798.1 + 29399 0.67 0.716735
Target:  5'- gGgCCGCGCCggcgGGGCGCcGggGGGAc- -3'
miRNA:   3'- gCgGGCGCGG----CCCGCGaUuaCUCUac -5'
5519 5' -59.2 NC_001798.1 + 59700 0.67 0.716735
Target:  5'- aCGCCCGUcuUCGGGCGCUu----GGUGg -3'
miRNA:   3'- -GCGGGCGc-GGCCCGCGAuuacuCUAC- -5'
5519 5' -59.2 NC_001798.1 + 31783 0.67 0.716735
Target:  5'- aCGCgCGCgggucgggaggGCCGGGCGCggaggGAGGa- -3'
miRNA:   3'- -GCGgGCG-----------CGGCCCGCGauua-CUCUac -5'
5519 5' -59.2 NC_001798.1 + 25730 0.67 0.72643
Target:  5'- gCGCCCccgacgucucgGCGCUGGGCGCgca-GGGcGUGc -3'
miRNA:   3'- -GCGGG-----------CGCGGCCCGCGauuaCUC-UAC- -5'
5519 5' -59.2 NC_001798.1 + 66869 0.67 0.736047
Target:  5'- uCGCCgggGCGCCGGG-GCU--UGGGAa- -3'
miRNA:   3'- -GCGGg--CGCGGCCCgCGAuuACUCUac -5'
5519 5' -59.2 NC_001798.1 + 134995 0.67 0.736047
Target:  5'- gGCCCGCGgUGGGCGCca--GGGu-- -3'
miRNA:   3'- gCGGGCGCgGCCCGCGauuaCUCuac -5'
5519 5' -59.2 NC_001798.1 + 17121 0.67 0.736047
Target:  5'- cCGCCCGCGagCGGuaguGCGC-GGUGAGGc- -3'
miRNA:   3'- -GCGGGCGCg-GCC----CGCGaUUACUCUac -5'
5519 5' -59.2 NC_001798.1 + 148016 0.67 0.742729
Target:  5'- gCGCCCGUccccuuccucuaccGCgUGGGCGCgggcgggGGGGUGg -3'
miRNA:   3'- -GCGGGCG--------------CG-GCCCGCGauua---CUCUAC- -5'
5519 5' -59.2 NC_001798.1 + 52079 0.67 0.745578
Target:  5'- cCGCCCGCuacGCgGGGCGC--AUGAcGUa -3'
miRNA:   3'- -GCGGGCG---CGgCCCGCGauUACUcUAc -5'
5519 5' -59.2 NC_001798.1 + 91786 0.67 0.745578
Target:  5'- aCGCCCccugccgaugacGCGCgGGGCGUggggaccGUGGGcgGg -3'
miRNA:   3'- -GCGGG------------CGCGgCCCGCGau-----UACUCuaC- -5'
5519 5' -59.2 NC_001798.1 + 98861 0.66 0.755014
Target:  5'- uGCCCGCccccgaCGGGCGCcAcgGuGGUGc -3'
miRNA:   3'- gCGGGCGcg----GCCCGCGaUuaCuCUAC- -5'
5519 5' -59.2 NC_001798.1 + 75988 0.66 0.764345
Target:  5'- uGCCCGCcgccCCGGGCGCcgGcgGcAGGg- -3'
miRNA:   3'- gCGGGCGc---GGCCCGCGa-UuaC-UCUac -5'
5519 5' -59.2 NC_001798.1 + 24668 0.66 0.773564
Target:  5'- gCGgCCGUGCCGGG-GCUGGccGGAg- -3'
miRNA:   3'- -GCgGGCGCGGCCCgCGAUUacUCUac -5'
5519 5' -59.2 NC_001798.1 + 153033 0.66 0.773564
Target:  5'- gGCCCGCGCgGcGGCGCgcgguUGGc--- -3'
miRNA:   3'- gCGGGCGCGgC-CCGCGauu--ACUcuac -5'
5519 5' -59.2 NC_001798.1 + 3774 0.66 0.782662
Target:  5'- gCGCCCacacggGCGCCgGGGCGCcc--GAGGc- -3'
miRNA:   3'- -GCGGG------CGCGG-CCCGCGauuaCUCUac -5'
5519 5' -59.2 NC_001798.1 + 7712 0.66 0.782662
Target:  5'- uGCCCGCGgaccaCCGGGCcuuuuuucggacGgUGAUcGAGGUGu -3'
miRNA:   3'- gCGGGCGC-----GGCCCG------------CgAUUA-CUCUAC- -5'
5519 5' -59.2 NC_001798.1 + 113629 0.66 0.782662
Target:  5'- uCGCCUGCGCgGccGGCGCcgccAUGuGGGUGg -3'
miRNA:   3'- -GCGGGCGCGgC--CCGCGau--UAC-UCUAC- -5'
5519 5' -59.2 NC_001798.1 + 32789 0.66 0.788954
Target:  5'- gCGCCCGCGCCGGccggcgacgcccccGCggGCcAcgGGGAg- -3'
miRNA:   3'- -GCGGGCGCGGCC--------------CG--CGaUuaCUCUac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.