miRNA display CGI


Results 21 - 40 of 69 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5519 5' -59.2 NC_001798.1 + 147173 0.69 0.577467
Target:  5'- cCGCCCgGCGCCGGGCGgaAGg------ -3'
miRNA:   3'- -GCGGG-CGCGGCCCGCgaUUacucuac -5'
5519 5' -59.2 NC_001798.1 + 93271 0.69 0.587398
Target:  5'- gGCCCGCGCCG-GCGCcgucGGGGc- -3'
miRNA:   3'- gCGGGCGCGGCcCGCGauuaCUCUac -5'
5519 5' -59.2 NC_001798.1 + 72154 0.69 0.597361
Target:  5'- gGCCgGCGUCGGGCccacGAUGcAGAUGg -3'
miRNA:   3'- gCGGgCGCGGCCCGcga-UUAC-UCUAC- -5'
5519 5' -59.2 NC_001798.1 + 141484 0.69 0.607348
Target:  5'- uCG-CCGCGCgGGGgGCUGAUGuccGUGg -3'
miRNA:   3'- -GCgGGCGCGgCCCgCGAUUACuc-UAC- -5'
5519 5' -59.2 NC_001798.1 + 9721 0.69 0.607348
Target:  5'- gGCUCGgGCU-GGCGCUGGggGAGGUGc -3'
miRNA:   3'- gCGGGCgCGGcCCGCGAUUa-CUCUAC- -5'
5519 5' -59.2 NC_001798.1 + 3814 0.69 0.607348
Target:  5'- gGCCCGCGCCuccuccgccucGGGCGCcccccaGAGGc- -3'
miRNA:   3'- gCGGGCGCGG-----------CCCGCGauua--CUCUac -5'
5519 5' -59.2 NC_001798.1 + 29534 0.69 0.607348
Target:  5'- cCGCCCcCGCCGGGgCGCgcggcuauUGGGGg- -3'
miRNA:   3'- -GCGGGcGCGGCCC-GCGauu-----ACUCUac -5'
5519 5' -59.2 NC_001798.1 + 31246 0.69 0.607348
Target:  5'- gCGCCC-CGUugCGGGCGggGGUGGGAUc -3'
miRNA:   3'- -GCGGGcGCG--GCCCGCgaUUACUCUAc -5'
5519 5' -59.2 NC_001798.1 + 140194 0.69 0.607348
Target:  5'- cCGCCUGCgGCC-GGUGCUGGUGuGcGUGg -3'
miRNA:   3'- -GCGGGCG-CGGcCCGCGAUUACuC-UAC- -5'
5519 5' -59.2 NC_001798.1 + 154177 0.69 0.607348
Target:  5'- gGCCCGgaGCCGGaGCGCgucgGGGcgGg -3'
miRNA:   3'- gCGGGCg-CGGCC-CGCGauuaCUCuaC- -5'
5519 5' -59.2 NC_001798.1 + 39844 0.69 0.617353
Target:  5'- cCGCCgCGCuGCCGGGCgaggcgucgagGCUucgGGGGUGc -3'
miRNA:   3'- -GCGG-GCG-CGGCCCG-----------CGAuuaCUCUAC- -5'
5519 5' -59.2 NC_001798.1 + 26518 0.69 0.627368
Target:  5'- uGgCCGCGgCGGGCgGCggcgugGAGGUGg -3'
miRNA:   3'- gCgGGCGCgGCCCG-CGauua--CUCUAC- -5'
5519 5' -59.2 NC_001798.1 + 129295 0.69 0.627368
Target:  5'- gGCaCCGCG-CGGGCGCggagGAGGg- -3'
miRNA:   3'- gCG-GGCGCgGCCCGCGauuaCUCUac -5'
5519 5' -59.2 NC_001798.1 + 96676 0.69 0.627368
Target:  5'- aCGgCCGCGCUGGaGCGCguccGGGAg- -3'
miRNA:   3'- -GCgGGCGCGGCC-CGCGauuaCUCUac -5'
5519 5' -59.2 NC_001798.1 + 96093 0.69 0.627368
Target:  5'- aGUCCGCGCgGGGCGCgccucUGAc--- -3'
miRNA:   3'- gCGGGCGCGgCCCGCGauu--ACUcuac -5'
5519 5' -59.2 NC_001798.1 + 9162 0.68 0.647402
Target:  5'- cCGCCCGCGCCGGGgGgcagggucuCUGGcGGGu-- -3'
miRNA:   3'- -GCGGGCGCGGCCCgC---------GAUUaCUCuac -5'
5519 5' -59.2 NC_001798.1 + 96934 0.68 0.677347
Target:  5'- cCGCCCGCGCgCGaGCGCUcuGUGuGcUGg -3'
miRNA:   3'- -GCGGGCGCG-GCcCGCGAu-UACuCuAC- -5'
5519 5' -59.2 NC_001798.1 + 9767 0.67 0.697145
Target:  5'- gGUaCUGCGCCGcGGUGCUGAUGGucauGUGg -3'
miRNA:   3'- gCG-GGCGCGGC-CCGCGAUUACUc---UAC- -5'
5519 5' -59.2 NC_001798.1 + 4359 0.67 0.697145
Target:  5'- gCGCCggcggggggCGCGCCGgcGGCGgUGGUGGuGGUGg -3'
miRNA:   3'- -GCGG---------GCGCGGC--CCGCgAUUACU-CUAC- -5'
5519 5' -59.2 NC_001798.1 + 93631 0.67 0.70697
Target:  5'- aGUCauCGUCGGGCGCcag-GAGAUGg -3'
miRNA:   3'- gCGGgcGCGGCCCGCGauuaCUCUAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.